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Report for CCDS8091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8091.1 Public Homo sapiens 11 CDCA5 24 110 108 CCDS HistoryNCBI Gene:113130Re-query CCDS DB by CCDS ID:8091.1Re-query CCDS DB by GeneID:113130See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8091.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275517.8 ENSP00000275517.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000275517.8Link to Ensembl Protein Viewer:ENSP00000275517.3Re-query CCDS DB by Nucleotide ID:ENST00000275517Re-query CCDS DB by Protein ID:ENSP00000275517
Original member Current member NCBI NM_080668.4 NP_542399.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080668.4Link to Protein Sequence:NP_542399.1Re-query CCDS DB by Nucleotide ID:NM_080668Re-query CCDS DB by Protein ID:NP_542399Link to BLAST:NP_542399.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542399.1 252 Q96FF9 252 100% 0 0

Chromosomal Locations for CCDS 8091.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65079107 65079187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65079353 65079787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65083364 65083399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65083485 65083550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65083629 65083723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65083933 65083978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGTCTGGGAGGCGAACGCGGTCCGGAGGAGCCGCTCAGCGCTCCGGGCCAAGGGCCCCATCTCCTACTA
AGCCTCTGCGGAGGTCCCAGCGGAAATCAGGCTCTGAACTCCCGAGCATCCTCCCTGAAATCTGGCCGAA
GACACCCAGTGCGGCTGCAGTCAGAAAGCCCATCGTCTTAAAGAGGATCGTGGCCCATGCTGTAGAGGTC
CCAGCTGTCCAATCACCTCGCAGGAGCCCTAGGATTTCCTTTTTCTTGGAGAAAGAAAACGAGCCCCCTG
GCAGGGAGCTTACTAAGGAGGACCTTTTCAAGACACACAGCGTCCCTGCCACCCCCACCAGCACTCCTGT
GCCGAACCCTGAGGCCGAGTCCAGCTCCAAGGAAGGAGAGCTGGACGCCAGAGACTTGGAAATGTCTAAG
AAAGTCAGGCGTTCCTACAGCCGGCTGGAGACCCTGGGCTCTGCCTCTACCTCCACCCCAGGCCGCCGGT
CCTGCTTTGGCTTCGAGGGGCTGCTGGGGGCAGAAGACTTGTCCGGAGTCTCGCCAGTGGTGTGCTCCAA
ACTCACCGAGGTCCCCAGGGTTTGTGCAAAGCCCTGGGCCCCAGACATGACTCTCCCTGGAATCTCCCCA
CCACCCGAGAAACAGAAACGTAAGAAGAAGAAAATGCCAGAGATCTTGAAAACGGAGCTGGATGAGTGGG
CTGCGGCCATGAATGCCGAGTTTGAAGCTGCTGAGCAGTTTGATCTCCTGGTTGAATGA

Translation (252 aa):
MSGRRTRSGGAAQRSGPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEV
PAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKEGELDARDLEMSK
KVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGAEDLSGVSPVVCSKLTEVPRVCAKPWAPDMTLPGISP
PPEKQKRKKKKMPEILKTELDEWAAAMNAEFEAAEQFDLLVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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