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Report for CCDS8131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8131.1 Public Homo sapiens 11 CNIH2 24 110 108 CCDS HistoryNCBI Gene:254263Re-query CCDS DB by CCDS ID:8131.1Re-query CCDS DB by GeneID:254263See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8131.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311445.7 ENSP00000310003.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311445.7Link to Ensembl Protein Viewer:ENSP00000310003.6Re-query CCDS DB by Nucleotide ID:ENST00000311445Re-query CCDS DB by Protein ID:ENSP00000310003
Original member Current member NCBI NM_182553.3 NP_872359.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182553.3Link to Protein Sequence:NP_872359.1Re-query CCDS DB by Nucleotide ID:NM_182553Re-query CCDS DB by Protein ID:NP_872359Link to BLAST:NP_872359.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872359.1 160 Q6PI25 160 100% 0 0

Chromosomal Locations for CCDS 8131.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66278457 66278537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66282259 66282327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66282733 66282780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66283035 66283147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66283248 66283391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66283570 66283597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGGCGTTCACCTTCGCCGCGTTCTGCTACATGCTCACCCTGGTGCTGTGCGCCTCCCTCATCTTCTTTG
TCATCTGGCACATCATAGCCTTTGATGAGCTGCGGACCGACTTCAAGAACCCCATCGACCAGGGGAACCC
TGCGCGGGCACGCGAGCGTTTAAAAAACATCGAACGCATCTGCTGCCTCCTGAGGAAGCTGGTGGTCCCA
GAATACTCCATCCACGGCCTCTTCTGTCTGATGTTTCTGTGTGCAGCAGAGTGGGTGACCCTGGGCCTCA
ACATCCCCCTCCTCTTCTACCACCTCTGGAGGTACTTCCACCGTCCTGCAGATGGCTCTGAGGTCATGTA
TGATGCGGTCTCCATCATGAATGCTGACATTCTCAACTACTGCCAGAAGGAGTCCTGGTGCAAACTTGCC
TTCTACCTGCTCTCCTTCTTCTATTACCTGTACAGTATGGTTTATACGTTGGTGAGTTTCTAA

Translation (160 aa):
MAFTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERICCLLRKLVVP
EYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSIMNADILNYCQKESWCKLA
FYLLSFFYYLYSMVYTLVSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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