NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81393.1 Public Homo sapiens 1 UAP1 24 110 108 CCDS HistoryNCBI Gene:6675Re-query CCDS DB by CCDS ID:81393.1Re-query CCDS DB by GeneID:6675See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367925.6 ENSP00000356902.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367925.6Link to Ensembl Protein Viewer:ENSP00000356902.1Re-query CCDS DB by Nucleotide ID:ENST00000367925Re-query CCDS DB by Protein ID:ENSP00000356902
Original member Current member NCBI NM_001324116.5 NP_001311045.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001324116.5Link to Protein Sequence:NP_001311045.1Re-query CCDS DB by Nucleotide ID:NM_001324116Re-query CCDS DB by Protein ID:NP_001311045Link to BLAST:NP_001311045.1
Original member Current member NCBI NM_001388401.1 NP_001375330.1 Accepted alive Link to Nucleotide Sequence:NM_001388401.1Link to Protein Sequence:NP_001375330.1Re-query CCDS DB by Nucleotide ID:NM_001388401Re-query CCDS DB by Protein ID:NP_001375330Link to BLAST:NP_001375330.1
Original member Current member NCBI NM_001388402.1 NP_001375331.1 Accepted alive Link to Nucleotide Sequence:NM_001388402.1Link to Protein Sequence:NP_001375331.1Re-query CCDS DB by Nucleotide ID:NM_001388402Re-query CCDS DB by Protein ID:NP_001375331Link to BLAST:NP_001375331.1
Original member Current member NCBI NM_001399791.1 NP_001386720.1 Accepted alive Link to Nucleotide Sequence:NM_001399791.1Link to Protein Sequence:NP_001386720.1Re-query CCDS DB by Nucleotide ID:NM_001399791Re-query CCDS DB by Protein ID:NP_001386720Link to BLAST:NP_001386720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311045.1 522 Q16222-1 522 100% 0 0
NP_001375330.1 522 Q16222-1 522 100% 0 0
NP_001375331.1 522 Q16222-1 522 100% 0 0
NP_001386720.1 522 Q16222-1 522 100% 0 0

Chromosomal Locations for CCDS 81393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162566069 162566348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162576777 162576981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162579428 162579603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162581287 162581459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162587475 162587668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162588693 162588833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162590323 162590511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162592732 162592782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162597792 162597858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162599271 162599363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGAACATTAATGACCTCAAACTCACGTTGTCCAAAGCTGGGCAAGAGCACCTACTACGTTTCTGGAATG
AGCTTGAAGAAGCCCAACAGGTAGAACTTTATGCAGAGCTCCAGGCCATGAACTTTGAGGAGCTGAACTT
CTTTTTCCAAAAGGCCATTGAAGGTTTTAACCAGTCTTCTCACCAAAAGAATGTGGATGCACGAATGGAA
CCTGTGCCTCGAGAGGTATTAGGCAGTGCTACAAGGGATCAAGATCAGCTCCAGGCCTGGGAAAGTGAAG
GACTTTTCCAGATTTCTCAGAATAAAGTAGCAGTTCTTCTTCTAGCTGGTGGGCAGGGGACAAGACTCGG
CGTTGCATATCCTAAGGGGATGTATGATGTTGGTTTGCCATCCCGTAAGACACTTTTTCAGATTCAAGCA
GAGCGTATCCTGAAGCTACAGCAGGTTGCTGAAAAATATTATGGCAACAAATGCATTATTCCATGGTATA
TAATGACCAGTGGCAGAACAATGGAATCTACAAAGGAGTTCTTCACCAAGCACAAGTACTTTGGTTTAAA
AAAAGAGAATGTAATCTTTTTTCAGCAAGGAATGCTCCCCGCCATGAGTTTTGATGGGAAAATTATTTTG
GAAGAGAAGAACAAAGTTTCTATGGCTCCAGATGGGAATGGTGGTCTTTATCGGGCACTTGCAGCCCAGA
ATATTGTGGAGGATATGGAGCAAAGAGGCATTTGGAGCATTCATGTCTATTGTGTTGACAACATATTAGT
AAAAGTGGCAGACCCACGGTTCATTGGATTTTGCATTCAGAAAGGAGCAGACTGTGGAGCAAAGGTGGTA
GAGAAAACGAACCCTACAGAACCAGTTGGAGTGGTTTGCCGAGTGGATGGAGTTTACCAGGTGGTAGAAT
ATAGTGAGATTTCCCTGGCAACAGCTCAAAAACGAAGCTCAGACGGACGACTGCTGTTCAATGCGGGGAA
CATTGCCAACCATTTCTTCACTGTACCATTTCTGAGAGATGTTGTCAATGTTTATGAACCTCAGTTGCAG
CACCATGTGGCTCAAAAGAAGATTCCTTATGTGGATACCCAAGGACAGTTAATTAAGCCAGACAAACCCA
ATGGAATAAAGATGGAAAAATTTGTCTTTGACATCTTCCAGTTTGCAAAGAAGTTTGTGGTATATGAAGT
ATTGCGAGAAGATGAGTTTTCCCCACTAAAGAATGCTGATAGTCAGAATGGGAAAGACAACCCTACTACT
GCAAGGCATGCTTTGATGTCCCTTCATCATTGCTGGGTCCTCAATGCAGGGGGCCATTTCATAGATGAAA
ATGGCTCTCGCCTTCCAGCAATTCCCCGCAGTGCTACAAATGGGAAGTCAGAGACCATCACAGCTGATGT
CAATCACAACTTGAAGGATGCCAATGATGTACCAATCCAATGTGAAATCTCTCCTCTTATCTCCTATGCT
GGAGAAGGATTAGAAAGTTATGTGGCAGATAAAGAATTCCATGCACCTCTAATCATCGATGAGAATGGAG
TTCATGAGCTGGTGAAAAATGGTATTTGA

Translation (522 aa):
MNINDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARME
PVPREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQA
ERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIIL
EEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVV
EKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQ
HHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTT
ARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRSATNGKSETITADVNHNLKDANDVPIQCEISPLISYA
GEGLESYVADKEFHAPLIIDENGVHELVKNGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH