NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81397.1 Public Homo sapiens 1 BLZF1 24 110 108 CCDS HistoryNCBI Gene:8548Re-query CCDS DB by CCDS ID:81397.1Re-query CCDS DB by GeneID:8548See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81397.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367807.7 ENSP00000356781.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367807.7Link to Ensembl Protein Viewer:ENSP00000356781.3Re-query CCDS DB by Nucleotide ID:ENST00000367807Re-query CCDS DB by Protein ID:ENSP00000356781
Original member Current member NCBI NM_001320972.2 NP_001307901.1 Accepted alive Link to Nucleotide Sequence:NM_001320972.2Link to Protein Sequence:NP_001307901.1Re-query CCDS DB by Nucleotide ID:NM_001320972Re-query CCDS DB by Protein ID:NP_001307901Link to BLAST:NP_001307901.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307901.1 174 Q9H2G9-2 174 100% 0 0

Chromosomal Locations for CCDS 81397.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169369523 169369550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169376540 169377036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGACTACTAAAAATTTAGAAACCAAAGTCACCGTTACTTCATCCCCAATCCGAGGAGCAGGAGATGGAA
TGGAAACTGAGGAACCACCTAAATCTGTTGAAGTTACCTCCGGAGTCCAATCTAGAAAGCATCATAGTCT
TCAGAGTCCATGGAAGAAAGCAGTTCCATCAGAGAGCCCAGGAGTTCTTCAGCTAGGGAAAATGCTCACT
GAAAAAGCAATGGAAGTTAAAGCTGTAAGAATATTAGTTCCCAAAGCTGCTATAACTCATGATATCCCCA
ACAAAAATACAAAGGTTAAGTCTCTGGGACATCATAAAGGAGAATTCCTTGGTCAGTCAGAGGGAGTTAT
AGAACCTAATAAGGAACTCTCAGAGGTAAAGAATGTATTGGAAAAGCTCAAGAATTCTGAAAGAAGGTTA
CTACAGGACAAAGAAGGTCTTTCAAACCAGCTCCGTGTACAGACAGAGGTAAGAAGAGCCTTAATCGATA
AAATGAGTACTACTCTTTACGTCTGGACCTTTTAA

Translation (174 aa):
MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESPGVLQLGKMLT
EKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPNKELSEVKNVLEKLKNSERRL
LQDKEGLSNQLRVQTEVRRALIDKMSTTLYVWTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH