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Report for CCDS81417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81417.1 Public Homo sapiens 1 KDM5B 24 110 108 CCDS HistoryNCBI Gene:10765Re-query CCDS DB by CCDS ID:81417.1Re-query CCDS DB by GeneID:10765See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367264.7 ENSP00000356233.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367264.7Link to Ensembl Protein Viewer:ENSP00000356233.2Re-query CCDS DB by Nucleotide ID:ENST00000367264Re-query CCDS DB by Protein ID:ENSP00000356233
Original member Current member NCBI NM_001314042.2 NP_001300971.1 Accepted alive Link to Nucleotide Sequence:NM_001314042.2Link to Protein Sequence:NP_001300971.1Re-query CCDS DB by Nucleotide ID:NM_001314042Re-query CCDS DB by Protein ID:NP_001300971Link to BLAST:NP_001300971.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300971.1 1580 Q9UGL1-2 1580 100% 0 0

Chromosomal Locations for CCDS 81417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 202729036 202729173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202729707 202730027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202730909 202731063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202731828 202731939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202733401 202733886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202735429 202735587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202736213 202736392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202740674 202740812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202741367 202741722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202742391 202742505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202742655 202742805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202745858 202745982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202746142 202746323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202748945 202749139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202750659 202750778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202752905 202753067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202755271 202755452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202756358 202756516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202758391 202758510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202760415 202760573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202762699 202762808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202764049 202764145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202766397 202766504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202766926 202767060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202773118 202773288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202774613 202774735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202777017 202777094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202808102 202808305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4743 nt):
ATGGAGGCGGCCACCACACTGCACCCAGGCCCGCGCCCGGCGCTGCCCCTCGGGGGCCCGGGCCCGCTGG
GCGAGTTCCTGCCTCCACCCGAGTGCCCGGTCTTCGAACCCAGCTGGGAAGAGTTCGCGGACCCCTTCGC
TTTCATCCACAAGATCCGGCCCATAGCCGAGCAGACTGGCATCTGTAAGGTGCGGCCGCCGCCGGATTGG
CAGCCACCATTTGCATGTGATGTTGATAAACTTCATTTTACGCCACGTATCCAGAGACTGAATGAATTGG
AGGCCCAAACTCGTGTAAAATTGAATTTCTTGGACCAGATTGCAAAGTACTGGGAGTTACAGGGAAGTAC
TCTGAAAATTCCACATGTGGAGAGGAAGATCTTGGACTTATTTCAGCTTAATAAGTTAGTTGCAGAAGAA
GGTGGATTTGCAGTTGTTTGCAAGGATAGAAAATGGACCAAAATTGCTACCAAGATGGGGTTTGCTCCTG
GCAAAGCAGTGGGCTCACATATCAGAGGGCATTATGAACGAATTCTCAACCCCTACAACTTATTCCTGTC
CGGAGACAGCCTAAGGTGTTTGCAGAAGCCAAACCTGACCACAGACACTAAGGACAAGGAGTACAAACCC
CATGATATTCCCCAGAGGCAGTCTGTGCAGCCTTCGGAAACGTGCCCCCCAGCCCGACGAGCAAAACGCA
TGAGAGCAGAGAGACAGAGTCTCGCTGTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTG
CAACCTCCGCCTCCTAGATTCCAGCAATTCTTCTGCCTCAGCCTCCCAAGCCATGAATATTAAAATAGAA
CCCGAGGAGACAACGGAAGCCAGAACTCATAATCTGAGACGTCGAATGGGTTGTCCAACTCCAAAATGTG
AAAATGAGAAAGAAATGAAGAGTAGCATCAAGCAAGAACCTATTGAGAGGAAAGATTATATTGTAGAAAA
TGAGAAGGAAAAGCCCAAGAGTCGATCTAAAAAAGCCACCAATGCTGTGGACCTGTATGTCTGTCTTTTA
TGTGGCAGTGGCAATGATGAAGACCGGCTACTGTTGTGTGATGGCTGTGATGACAGTTACCATACCTTTT
GCTTGATCCCACCTCTCCATGATGTTCCCAAGGGAGACTGGAGGTGTCCTAAGTGTTTGGCTCAGGAATG
TAGTAAGCCACAAGAAGCATTTGGCTTTGAACAAGCAGCCAGGGACTATACCCTCCGTACTTTTGGGGAA
ATGGCAGATGCGTTCAAATCTGATTACTTCAACATGCCAGTCCATATGGTCCCCACAGAGCTTGTTGAGA
AAGAATTTTGGAGACTAGTAAGCACTATTGAGGAGGATGTCACAGTGGAATATGGAGCTGACATTGCCTC
AAAGGAATTTGGCAGTGGCTTTCCTGTCCGAGATGGGAAAATCAAACTCTCACCTGAGGAAGAGGAGTAT
CTTGATAGTGGCTGGAATTTGAACAACATGCCAGTGATGGAGCAGTCTGTCCTTGCACATATTACTGCTG
ATATATGTGGCATGAAACTTCCTTGGTTGTATGTGGGAATGTGCTTTTCTTCATTCTGTTGGCACATTGA
AGACCACTGGAGCTATTCAATTAACTACTTGCACTGGGGTGAGCCAAAAACCTGGTATGGAGTCCCAGGG
TATGCTGCTGAGCAGCTAGAAAATGTAATGAAGAAACTAGCTCCAGAACTCTTTGTGTCCCAGCCGGATC
TCCTCCATCAGCTTGTGACCATCATGAACCCCAATACCCTGATGACTCATGAAGTGCCTGTTTACCGAAC
TAATCAGTGTGCTGGGGAGTTTGTGATTACATTTCCAAGAGCCTACCACAGTGGTTTTAACCAGGGTTTT
AATTTTGCTGAGGCTGTTAACTTCTGCACTGTTGATTGGCTGCCATTAGGCCGACAGTGTGTGGAGCATT
ATCGCTTGCTTCATCGATATTGTGTGTTTTCCCACGATGAGATGATCTGCAAGATGGCTTCCAAGGCTGA
TGTATTAGATGTTGTAGTGGCTTCAACTGTTCAGAAAGACATGGCCATTATGATTGAGGATGAGAAAGCT
TTAAGAGAAACTGTCCGTAAATTGGGAGTGATTGATTCGGAAAGAATGGATTTTGAGCTGTTGCCAGATG
ATGAACGTCAGTGTGTAAAATGCAAAACTACATGCTTCATGTCTGCCATCTCCTGTTCTTGTAAACCTGG
CCTTCTTGTTTGCCTGCATCATGTAAAAGAATTGTGTTCCTGTCCTCCTTACAAATATAAATTGCGGTAT
AGGTACACGCTGGATGATCTCTACCCTATGATGAATGCATTGAAGCTTCGAGCAGAATCTTACAACGAAT
GGGCCTTGAATGTGAATGAAGCTTTGGAGGCAAAGATCAACAAGAAGAAAAGCCTTGTCAGCTTCAAGGC
TTTAATTGAAGAATCTGAAATGAAGAAATTCCCAGACAATGATCTTTTGCGACACCTTCGCCTAGTCACA
CAGGATGCAGAGAAGTGTGCCTCTGTTGCGCAGCAGTTGCTTAATGGCAAAAGGCAAACTAGATATCGAT
CTGGTGGAGGGAAATCCCAAAATCAGTTGACAGTGAATGAGCTCCGGCAGTTTGTAACACAGCTGTATGC
TCTTCCATGTGTCCTCAGTCAGACACCATTACTAAAGGATCTCTTGAATCGTGTAGAAGATTTTCAACAG
CATAGTCAGAAACTACTCTCTGAGGAAACGCCTAGTGCTGCGGAGCTGCAGGACTTGCTAGATGTCAGCT
TTGAATTTGATGTTGAACTTCCACAGCTTGCTGAGATGCGTATCCGTTTGGAACAAGCCCGTTGGCTAGA
AGAGGTGCAGCAAGCTTGCCTAGACCCCAGCTCCCTTACTTTAGATGATATGAGACGTCTCATAGACCTA
GGGGTAGGGCTGGCCCCGTATTCAGCAGTGGAGAAAGCTATGGCCCGGCTGCAGGAACTGCTCACAGTGT
CAGAGCACTGGGACGACAAAGCCAAGAGTCTCCTCAAGGCCAGGCCACGACATTCATTGAATAGCCTTGC
TACGGCAGTAAAGGAAATCGAAGAGATCCCTGCATATCTGCCCAATGGTGCGGCTCTGAAAGACTCAGTG
CAGAGAGCCAGAGACTGGCTTCAGGATGTAGAGGGCCTGCAGGCTGGAGGACGTGTGCCAGTGTTAGACA
CACTCATAGAACTTGTTACACGAGGCCGATCTATCCCCGTACATCTGAATTCTTTGCCAAGACTGGAAAC
CCTAGTAGCTGAGGTTCAGGCTTGGAAAGAATGTGCTGTTAATACATTCTTGACTGAGAATTCTCCATAT
TCTCTCTTAGAGGTGCTGTGTCCTCGATGTGATATTGGCCTTTTGGGATTGAAAAGGAAGCAGAGAAAGT
TAAAGGAGCCCTTGCCAAATGGAAAGAAAAAAAGCACCAAATTAGAGAGTCTGAGTGACCTGGAGAGAGC
TTTAACTGAAAGCAAGGAGACTGCTTCAGCTATGGCAACTCTTGGGGAAGCTCGCCTAAGGGAAATGGAA
GCCTTGCAGTCTCTCAGACTCGCCAATGAAGGGAAATTGCTGTCGCCTCTCCAAGATGTGGATATAAAAA
TCTGCCTATGTCAGAAGGCCCCAGCTGCCCCTATGATTCAATGTGAACTCTGCAGGGATGCTTTCCACAC
CAGTTGTGTGGCGGTACCCAGTATTTCACAGGGCCTGCGAATCTGGCTTTGTCCCCATTGTCGGAGGTCA
GAGAAACCTCCATTAGAGAAAATTCTGCCCCTGCTCGCCTCCCTTCAGCGTATCCGAGTTCGCCTTCCTG
AGGGAGATGCACTTCGATATATGATTGAAAGAACCGTGAACTGGCAGCACAGAGCCCAGCAACTGCTTTC
GTCAGGGAATCTTAAATTTGTGCAAGATCGAGTGGGCTCAGGACTGTTATATAGCAGATGGCAAGCCTCA
GCAGGACAGGTGTCAGACACAAACAAGGTATCTCAACCTCCTGGCACAACATCATTTTCTTTGCCTGATG
ACTGGGACAACAGAACCTCATATTTGCACTCCCCCTTCTCAACTGGACGAAGTTGTATCCCCCTCCATGG
TGTTAGTCCAGAAGTGAATGAACTATTGATGGAAGCCCAGCTGCTCCAGGTATCCCTTCCTGAAATTCAG
GAACTTTACCAGACTTTACTTGCAAAGCCAAGCCCTGCTCAGCAGACTGACCGAAGCTCACCAGTGAGAC
CCAGCAGTGAGAAGAATGACTGTTGCCGAGGGAAGCGAGATGGAATTAACAGTCTTGAGAGAAAACTGAA
GAGACGCCTGGAAAGAGAGGGCCTCTCCAGTGAGCGGTGGGAACGAGTTAAGAAAATGCGGACCCCCAAA
AAGAAGAAAATCAAACTGAGCCACCCCAAGGACATGAACAATTTCAAGTTAGAGAGAGAGCGTAGCTATG
AATTAGTTCGTTCTGCTGAAACTCATTCCCTGCCCTCAGACACATCCTATTCCGAACAGGAAGACTCTGA
GGATGAAGATGCCATCTGCCCAGCTGTGAGCTGCCTGCAGCCAGAAGGAGATGAGGTGGACTGGGTCCAG
TGTGATGGCAGCTGCAATCAGTGGTTTCATCAGGTCTGTGTTGGTGTCTCCCCAGAGATGGCAGAGAAAG
AAGACTACATCTGTGTGCGCTGTACTGTGAAGGACGCACCAAGCCGAAAGTAA

Translation (1580 aa):
MEAATTLHPGPRPALPLGGPGPLGEFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDW
QPPFACDVDKLHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEE
GGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSGDSLRCLQKPNLTTDTKDKEYKP
HDIPQRQSVQPSETCPPARRAKRMRAERQSLAVLPRLECSGAILAHCNLRLLDSSNSSASASQAMNIKIE
PEETTEARTHNLRRRMGCPTPKCENEKEMKSSIKQEPIERKDYIVENEKEKPKSRSKKATNAVDLYVCLL
CGSGNDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKCLAQECSKPQEAFGFEQAARDYTLRTFGE
MADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDGKIKLSPEEEEY
LDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPG
YAAEQLENVMKKLAPELFVSQPDLLHQLVTIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGF
NFAEAVNFCTVDWLPLGRQCVEHYRLLHRYCVFSHDEMICKMASKADVLDVVVASTVQKDMAIMIEDEKA
LRETVRKLGVIDSERMDFELLPDDERQCVKCKTTCFMSAISCSCKPGLLVCLHHVKELCSCPPYKYKLRY
RYTLDDLYPMMNALKLRAESYNEWALNVNEALEAKINKKKSLVSFKALIEESEMKKFPDNDLLRHLRLVT
QDAEKCASVAQQLLNGKRQTRYRSGGGKSQNQLTVNELRQFVTQLYALPCVLSQTPLLKDLLNRVEDFQQ
HSQKLLSEETPSAAELQDLLDVSFEFDVELPQLAEMRIRLEQARWLEEVQQACLDPSSLTLDDMRRLIDL
GVGLAPYSAVEKAMARLQELLTVSEHWDDKAKSLLKARPRHSLNSLATAVKEIEEIPAYLPNGAALKDSV
QRARDWLQDVEGLQAGGRVPVLDTLIELVTRGRSIPVHLNSLPRLETLVAEVQAWKECAVNTFLTENSPY
SLLEVLCPRCDIGLLGLKRKQRKLKEPLPNGKKKSTKLESLSDLERALTESKETASAMATLGEARLREME
ALQSLRLANEGKLLSPLQDVDIKICLCQKAPAAPMIQCELCRDAFHTSCVAVPSISQGLRIWLCPHCRRS
EKPPLEKILPLLASLQRIRVRLPEGDALRYMIERTVNWQHRAQQLLSSGNLKFVQDRVGSGLLYSRWQAS
AGQVSDTNKVSQPPGTTSFSLPDDWDNRTSYLHSPFSTGRSCIPLHGVSPEVNELLMEAQLLQVSLPEIQ
ELYQTLLAKPSPAQQTDRSSPVRPSSEKNDCCRGKRDGINSLERKLKRRLEREGLSSERWERVKKMRTPK
KKKIKLSHPKDMNNFKLERERSYELVRSAETHSLPSDTSYSEQEDSEDEDAICPAVSCLQPEGDEVDWVQ
CDGSCNQWFHQVCVGVSPEMAEKEDYICVRCTVKDAPSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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