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Report for CCDS8149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8149.1 Public Homo sapiens 11 RBM4B 24 110 108 CCDS HistoryNCBI Gene:83759Re-query CCDS DB by CCDS ID:8149.1Re-query CCDS DB by GeneID:83759See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8149.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310046.9 ENSP00000310471.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310046.9Link to Ensembl Protein Viewer:ENSP00000310471.4Re-query CCDS DB by Nucleotide ID:ENST00000310046Re-query CCDS DB by Protein ID:ENSP00000310471
Original member Current member EBI ENST00000525754.5 ENSP00000433071.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525754.5Link to Ensembl Protein Viewer:ENSP00000433071.1Re-query CCDS DB by Nucleotide ID:ENST00000525754Re-query CCDS DB by Protein ID:ENSP00000433071
Original member Current member NCBI NM_031492.4 NP_113680.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031492.4Link to Protein Sequence:NP_113680.1Re-query CCDS DB by Nucleotide ID:NM_031492Re-query CCDS DB by Protein ID:NP_113680Link to BLAST:NP_113680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113680.1 359 Q9BQ04 359 100% 0 0

Chromosomal Locations for CCDS 8149.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66668624 66669291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66676668 66677079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGTGAAGCTGTTCATCGGAAACCTTCCCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGC
AGTATGGGAAGGTGCTGGAATGTGACATCATTAAGAATTACGGCTTTGTGCACATAGAAGACAAGACGGC
AGCTGAGGATGCCATACGCAACCTGCACCATTACAAGCTTCATGGGGTGAACATCAACGTGGAAGCCAGC
AAGAATAAGAGCAAAGCTTCAACCAAGTTACACGTGGGTAACATCAGCCCCACTTGTACCAACCAAGAGC
TTCGAGCCAAGTTTGAGGAGTATGGTCCGGTCATCGAATGTGACATCGTGAAAGATTATGCCTTCGTACA
CATGGAGCGGGCAGAGGATGCAGTGGAGGCCATCAGGGGCCTTGACAACACAGAGTTTCAAGGCAAAAGA
ATGCATGTGCAGTTGTCCACAAGCCGGCTTCGGACTGCCCCTGGTATGGGAGACCAGAGTGGCTGCTATC
GGTGTGGGAAAGAAGGGCACTGGTCCAAAGAGTGCCCAGTAGATCGTACGGGTCGTGTGGCAGACTTTAC
TGAGCAGTATAATGAACAATATGGAGCAGTTCGAACACCTTACACCATGGGCTACGGGGAATCCATGTAT
TACAACGATGCATATGGAGCACTCGACTACTATAAGCGATACCGGGTCCGCTCTTATGAGGCAGTAGCAG
CGGCGGCAGCGGCTTCTGCATACAACTACGCAGAGCAGACCATGTCCCATCTGCCTCAAGTCCAAAGCAC
AACTGTGACCAGCCACCTCAACTCTACTTCTGTTGATCCCTATGACAGACACCTATTGCCAAACTCTGGC
GCTGCTGCCACTTCAGCTGCTATGGCTGCTGCTGCAGCCACCACTTCCTCCTACTATGGAAGGGACAGGA
GCCCACTGCGTCGTGCTGCAGCCATGCTCCCCACAGTTGGAGAGGGCTACGGTTATGGGCCAGAGAGTGA
ATTATCTCAGGCTTCCGCAGCTACACGGAATTCTCTGTATGACATGGCCCGGTATGAACGGGAGCAGTAT
GTGGACCGAGCCCGGTACTCAGCCTTTTAA

Translation (359 aa):
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS
KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR
MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY
YNDAYGALDYYKRYRVRSYEAVAAAAAASAYNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSG
AAATSAAMAAAAATTSSYYGRDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQY
VDRARYSAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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