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Report for CCDS81510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81510.1 Public Homo sapiens 10 SPMIP5 24 110 108 CCDS HistoryNCBI Gene:143379Re-query CCDS DB by CCDS ID:81510.1Re-query CCDS DB by GeneID:143379See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81510.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000588184.2 ENSP00000465712.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000588184.2Link to Ensembl Protein Viewer:ENSP00000465712.1Re-query CCDS DB by Nucleotide ID:ENST00000588184Re-query CCDS DB by Protein ID:ENSP00000465712
Original member Current member NCBI NM_001330142.3 NP_001317071.1 Accepted alive Link to Nucleotide Sequence:NM_001330142.3Link to Protein Sequence:NP_001317071.1Re-query CCDS DB by Nucleotide ID:NM_001330142Re-query CCDS DB by Protein ID:NP_001317071Link to BLAST:NP_001317071.1
Original member Current member NCBI NM_001350930.2 NP_001337859.1 Accepted alive Link to Nucleotide Sequence:NM_001350930.2Link to Protein Sequence:NP_001337859.1Re-query CCDS DB by Nucleotide ID:NM_001350930Re-query CCDS DB by Protein ID:NP_001337859Link to BLAST:NP_001337859.1
Original member Current member NCBI NM_001350931.2 NP_001337860.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001350931.2Link to Protein Sequence:NP_001337860.1Re-query CCDS DB by Nucleotide ID:NM_001350931Re-query CCDS DB by Protein ID:NP_001337860Link to BLAST:NP_001337860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317071.1 234 Q8WW14-1 234 100% 0 0
NP_001337859.1 234 Q8WW14-1 234 100% 0 0
NP_001337860.1 234 Q8WW14-1 234 100% 0 0

Chromosomal Locations for CCDS 81510.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 116663906 116664051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116664174 116664271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116664761 116664947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116665608 116665826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116668258 116668312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGGAGCCTTCCAAGACCTTCATGAGAAACCTGCCAATCACACCAGGCTATAGCGGCTTTGTGCCATTCC
TCAGCTGCCAAGGAATGTCCAAGGAGGATGACATGAACCACTGTGTGAAAACCTTCCAGGAGAAAACACA
GCGCTATAAAGAACAGCTGCGGGAATTGTGCTGCGCAGTGGCCACTGCCCCGAAACTGAAACCTGTCAAC
TCCGAGGAGACGGTCCTGCAGGCCCTGCACCAGTACAATCTGCAGTACCACCCCCTGATCCTGGAATGCA
AATATGTAAAGAAACCTCTCCAGGAGCCCCCGATCCCTGGCTGGGCAGGCTACCTGCCGAGAGCCAAGGT
CACTGAATTTGGCTGTGGCACGAGATACACTGTCATGGCCAAAAACTGCTACAAGGACTTCCTGGAGATC
ACGGAGAGGGCCAAGAAGGCACATCTGAAACCATATGAAGAAATATATGGAGTTAGCTCCACAAAAACTT
CTGCTCCGTCTCCAAAAGTTTTGCAGCATGAAGAGCTGCTGCCAAAATATCCCGATTTTTCTATTCCAGA
TGGAAGCTGCCCTGCCCTTGGAAGGCCCCTGAGAGAGGACCCCAAAACTCCGCTGACATGTGGCTGTGCT
CAGAGGCCAAGTATACCATGCAGTGGGAAGATGTATCTAGAGCCACTGTCCTCCGCAAAGTATGCAGAAG
GCTAG

Translation (234 aa):
MEPSKTFMRNLPITPGYSGFVPFLSCQGMSKEDDMNHCVKTFQEKTQRYKEQLRELCCAVATAPKLKPVN
SEETVLQALHQYNLQYHPLILECKYVKKPLQEPPIPGWAGYLPRAKVTEFGCGTRYTVMAKNCYKDFLEI
TERAKKAHLKPYEEIYGVSSTKTSAPSPKVLQHEELLPKYPDFSIPDGSCPALGRPLREDPKTPLTCGCA
QRPSIPCSGKMYLEPLSSAKYAEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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