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Report for CCDS81542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81542.1 Public Homo sapiens 11 SLC22A18 24 110 108 CCDS HistoryNCBI Gene:5002Re-query CCDS DB by CCDS ID:81542.1Re-query CCDS DB by GeneID:5002See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449793.6 ENSP00000392072.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449793.6Link to Ensembl Protein Viewer:ENSP00000392072.2Re-query CCDS DB by Nucleotide ID:ENST00000449793Re-query CCDS DB by Protein ID:ENSP00000392072
Original member Current member NCBI NM_001315502.2 NP_001302431.1 Accepted alive Link to Nucleotide Sequence:NM_001315502.2Link to Protein Sequence:NP_001302431.1Re-query CCDS DB by Nucleotide ID:NM_001315502Re-query CCDS DB by Protein ID:NP_001302431Link to BLAST:NP_001302431.1

Chromosomal Locations for CCDS 81542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 2903346 2903489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2908233 2908330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2916622 2916740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2917988 2918095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2919307 2919407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2922102 2922203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2922436 2922556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2925010 2925197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGCAGGGAGCTCGGGCTCCCAGGGACCAGGGCCGGTCCCCCGGCAGGATGAGCGCTCTAGGCCGGTCCT
CGGTCATCTTGCTTACCTACGTGCTGGCCGCCACAGAACTTACCTGCCTCTTCATGCAGTTCTCCATCGT
GCCATACCTGTCTCGGAAACTGGGCCTGGATTCCATTGCCTTCGGCTACCTGCAAACCACCTTCGGGGTG
CTGCAGCTGCTGGGCGGGCCGGTATTTGGCAGGATTCAGTGCCCGGCCATCCTGGCTGCCCTGGCCACCC
TCCTGGGAGCTGTCCTCAGCTTCACCTGCATCCCCGCCAGCACCAAAGGGGCCAAAACTGACGCCCAGGC
TCCACTGCCAGGCGGCCCCCGGGCCAGTGTGTTCGACCTGAAGGCCATCGCCTCCCTGCTGCGGCTGCCA
GACGTCCCGAGGATCTTCCTGGTGAAGGTGGCCTCCAACTGCCCCACAGGGCTCTTCATGGTCATGTTCT
CCATCATCTCCATGGACTTCTTCCAGCTGGAGGCCGCCCAAGCTGGCTACCTCATGTCCTTCTTCGGGCT
CCTCCAGATGGTGACCCAGGGCCTGGTCATCGGGCAGCTGAGCAGCCACTTCTCGGAGGAGGTGCTGCTC
CGGGCCAGCGTGCTGGTCTTCATCGTGGTGGGCCTGGCCATGGCCTGGATGTCCAGCGTCTTCCACTTCT
GCCTCCTGGTGCCCGGCCTGGTGTTCAGCCTCTGCACCCTCAACGTGGTCACCGACAGCATGCTGATCAA
GGCTGTCTCCACCTCGGACACAGGGACCATGCTGGGCCTCTGCGCCTCTGTACAACCACTGCTCCGAACT
CTGGGACCCACGGTCGGCGGCCTCCTGTACCGCAGCTTTGGCGTCCCCGTCTTCGGCCACGTGCAGGTTG
CTATCAATACCCTTGTCCTCCTGGTCCTCTGGAGGAAACCTATGCCCCAGAGGAAGGACAAAGTCCGGTG
A

Translation (326 aa):
MQGARAPRDQGRSPGRMSALGRSSVILLTYVLAATELTCLFMQFSIVPYLSRKLGLDSIAFGYLQTTFGV
LQLLGGPVFGRIQCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIASLLRLP
DVPRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGLVIGQLSSHFSEEVLL
RASVLVFIVVGLAMAWMSSVFHFCLLVPGLVFSLCTLNVVTDSMLIKAVSTSDTGTMLGLCASVQPLLRT
LGPTVGGLLYRSFGVPVFGHVQVAINTLVLLVLWRKPMPQRKDKVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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