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Report for CCDS81770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81770.1 Public Homo sapiens 13 PCDH9 24 110 108 CCDS HistoryNCBI Gene:5101Re-query CCDS DB by CCDS ID:81770.1Re-query CCDS DB by GeneID:5101See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81770.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000456367.5 ENSP00000401699.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456367.5Link to Ensembl Protein Viewer:ENSP00000401699.2Re-query CCDS DB by Nucleotide ID:ENST00000456367Re-query CCDS DB by Protein ID:ENSP00000401699
Original member Current member NCBI NM_001318372.2 NP_001305301.1 Accepted alive Link to Nucleotide Sequence:NM_001318372.2Link to Protein Sequence:NP_001305301.1Re-query CCDS DB by Nucleotide ID:NM_001318372Re-query CCDS DB by Protein ID:NP_001305301Link to BLAST:NP_001305301.1

Chromosomal Locations for CCDS 81770.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 66304655 66305028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66631210 66631285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66903504 66903605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67225405 67228440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3588 nt):
ATGGACCTGAGGGATTTTTACCTGTTGGCTGCTCTGATTGCCTGTTTAAGGCTGGATTCCGCAATAGCTC
AA
GAACTTATTTACACTATTAGAGAGGAATTGCCTGAAAATGTGCCCATAGGAAACATACCAAAGGATCT
G
AACATTTCTCACATCAATGCTGCCACAGGGACCAGCGCCAGCCTTGTCTACAGACTGGTTTCTAAAGCT
GGG
GATGCCCCTTTGGTGAAAGTTTCCAGCAGCACTGGGGAAATTTTCACAACCTCCAACAGAATAGACA
GA
GAAAAACTCTGTGCTGGCGCCTCATATGCTGAGGAGAATGAGTGTTTCTTTGAACTTGAGGTGGTGAT
C
CTCCCCAATGATTTCTTCAGGCTGATCAAAATAAAAATAATTGTCAAGGATACCAATGATAATGCCCCC
ATG
TTTCCATCTCCTGTCATCAATATTTCCATTCCAGAAAACACTTTGATCAACAGCCGCTTTCCAATTC
CA
TCAGCAACAGATCCTGACACAGGCTTCAATGGTGTACAGCATTATGAATTGTTAAATGGGCAGAGTGT
T
TTTGGACTGGATATCGTGGAAACTCCAGAGGGAGAGAAGTGGCCACAACTGATTGTTCAGCAAAACTTG
GAT
AGAGAACAGAAAGATACCTATGTGATGAAAATCAAAGTAGAGGATGGAGGCACTCCACAGAAATCCA
GT
ACGGCCATACTGCAGGTCACAGTAAGTGATGTAAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGT
G
GAGGTGCATATTCCAGAGAATGCTCCCGTAGGTACCTCTGTAATTCAGCTCCATGCCACTGATGCAGAT
ATA
GGCAGTAATGCTGAAATCCGGTACATTTTTGGTGCCCAGGTCGCCCCTGCAACCAAAAGACTCTTTG
CT
TTAAATAATACTACTGGGCTGATTACAGTTCAGAGGTCCTTAGATAGAGAGGAGACAGCCATTCACAA
A
GTGACAGTGCTGGCTAGTGACGGCAGCTCCACTCCTGCTCGAGCAACGGTTACCATCAATGTCACCGAT
GTA
AATGATAACCCTCCTAATATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACCGTGTATTTAT
CT
GAGAAAGATCCTGTCAATACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACACAGATGTGAATGG
C
AAAGTGATCTGTTTTATTGAAAGAGAGGTCCCATTTCATTTGAAGGCGGTATATGACAACCAATATTTG
TTA
GAGACCTCTTCTTTGTTGGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATTGTTGCCTCTGATT
CT
GGGAAGCCCAGTTTAAATCAGACTGCCCTGGTAAGGGTTAAGCTTGAGGATGAAAATGACAACCCACC
A
ATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTTCTGAAAACAACCGACGTGGGTTATACTTAACAACT
ATT
AGTGCCACAGATGAAGACAGTGGGAAAAATGCAGACATTGTTTATCAGCTTGGACCGAATGCCTCCT
TC
TTTGATCTGGACCGAAAAACAGGAGTTTTGACAGCCTCCAGAGTATTTGACAGAGAAGAACAAGAACG
A
TTCATTTTTACAGTAACTGCCAGGGACAATGGGACCCCTCCCCTCCAAAGCCAAGCGGCTGTGATTGTT
ACT
GTTCTGGATGAGAATGACAATAGCCCCAAGTTTACTCATAATCATTTTCAATTTTTTGTGTCTGAGA
AT
CTGCCAAAGTATAGTACTGTGGGGGTAATCACAGTGACAGATGCAGATGCTGGAGAGAATAAAGCTGT
G
ACTCTTTCCATTCTAAATGACAATGATAATTTTGTGTTGGATCCCTATTCTGGAGTCATAAAGTCAAAT
GTC
TCATTTGATAGAGAGCAGCAGAGTTCCTACACTTTTGATGTCAAAGCCACTGATGGAGGACAACCAC
CT
CGTTCCTCTACTGCAAAAGTAACTATCAACGTCATGGATGTCAATGACAACAGCCCAGTTGTCATTTC
T
CCACCGTCTAATACTTCCTTTAAGTTGGTGCCCCTCTCAGCCATTCCTGGCTCCGTGGTAGCAGAAGTT
TTT
GCAGTGGATGTTGACACTGGAATGAACGCTGAACTAAAGTATACTATAGTGAGTGGAAACAATAAAG
GC
TTATTCCGGATTGATCCAGTAACAGGTAACATTACTCTGGAAGAAAAACCAGCACCTACTGATGTGGG
A
TTGCATCGTTTGGTGGTCAACATAAGTGACCTGGGGTACCCTAAGTCTTTGCACACGCTTGTGCTTGTA
TTC
CTTTATGTTAACGACACTGCTGGAAATGCCTCCTATATCTATGACTTGATCCGCAGGACTATGGAGA
CC
CCGTTGGACAGGAACATAGGGGATAGTAGCCAACCCTATCAAAATGAGGACTATCTAACCATCATGAT
T
GCCATCATCGCCGGTGCCATGGTGGTCATTGTTGTGATCTTCGTCACCGTTCTGGTGCGCTGTCGCCAT
GCA
TCAAGGTTCAAAGCAGCTCAGAGGAGCAAGCAAGGTGCCGAATGGATGTCCCCAAACCAGGAGAACA
AG
CAAAACAAGAAAAAGAAAAGAAAGAAAAGGAAGTCTCCCAAAAGCTCTCTTTTGAACTTTGTTACTAT
C
GAAGAGTCCAAACCCGATGATGCAGTTCATGAACCTATCAATGGGACAATAAGCCTGCCGGCTGAACTG
GAG
GAGCAAAGTATAGGAAGATTTGACTGGGGCCCGGCACCTCCAACAACATTCAAGCCTAACAGTCCTG
AC
CTGGCCAAGCACTACAAATCTGCTTCTCCACAGCCTGCTTTTCATCTCAAACCAGACACTCCAGTTTC
C
GTGAAAAAGCACCACGTGATTCAGGAACTCCCTTTGGACAACACCTTTGTTGGGGGTTGTGACACCCTT
TCT
AAACGCTCTTCCACTAGTTCAGATCACTTCAGTGCCTCAGAGTGCAGTTCCCAAGGAGGCTTCAAGA
CA
AAGGGCCCCTTACACACCAGACAGTGTAACTCACACAGCAAAAGTGACAATATTCCTGTCACTCCTCA
G
AAATGTCCCAGCTCCACGGGTTTCCACATTCAGGAGAATGAAGAAAGCCATTACGAGCCACAGGACGAA
TTC
TATGACCAGGCCTCTCCGGACAAGAGGACTGAAGCAGATGGCAACTCTGATCCCAACTCTGATGGGC
CT
TTGGGTCCCCGAGGATTAGCTGAAGCTACAGAGATGTGCACTCAAGAGTGCTTGGTTTTGGGTCACTC
T
GATAATTGCTGGATGCCTCCTGGCTTGGGTCCATATCAACACCCCAAATCTCCTCTCTCAACCTTTGCA
CCC
CAGAAAGAATGGGTGAAGAAGGACAAGCTTGTGAATGGGCACACCCTGACCAGAGCCTGGAAAGAAG
AC
AGCAACAGGAACCAGTTCAATGACCGTAAGCAGTATGGCTCCAATGAAGGCCATTTCAACAATGGCAG
C
CACATGACAGACATTCCTCTGGCAAATCTGAAGTCTTATAAGCAAGCAGGAGGTGCTACTGAGAGTCCT
AAG
GAGCACCAACTCTAA


Translation (1195 aa):
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVYRLVSKA
G
DAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKIKIIVKDTNDNAP
M
FPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDIVETPEGEKWPQLIVQQNL
D
REQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDAD
I
GSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTD
V
NDNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
L
ETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTT
I
SATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIFTVTARDNGTPPLQSQAAVIV
T
VLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDADAGENKAVTLSILNDNDNFVLDPYSGVIKSN
V
SFDREQQSSYTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEV
F
AVDVDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLV
F
LYVNDTAGNASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
A
SRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPINGTISLPAEL
E
EQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKKHHVIQELPLDNTFVGGCDTL
S
KRSSTSSDHFSASECSSQGGFKTKGPLHTRQ
CNSHSKSDNIPVTPQKCPSSTGFHIQENEESHYEPQDE
F
YDQASPDKRTEADGNSDPNS
DGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFA
P
QKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESP
K
EHQL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser