NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81809.1 Public Homo sapiens 14 PCNX4 24 110 108 CCDS HistoryNCBI Gene:64430Re-query CCDS DB by CCDS ID:81809.1Re-query CCDS DB by GeneID:64430See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81809.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406854.6 ENSP00000384801.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000406854.6Link to Ensembl Protein Viewer:ENSP00000384801.1Re-query CCDS DB by Nucleotide ID:ENST00000406854Re-query CCDS DB by Protein ID:ENSP00000384801
Original member Current member NCBI NM_001330177.2 NP_001317106.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001330177.2Link to Protein Sequence:NP_001317106.1Re-query CCDS DB by Nucleotide ID:NM_001330177Re-query CCDS DB by Protein ID:NP_001317106Link to BLAST:NP_001317106.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317106.1 1172 Q63HM2 1172 100% 0 0

Chromosomal Locations for CCDS 81809.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 60107639 60108327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60114700 60114879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60114974 60115461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60115719 60115819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60115941 60116060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60118329 60118692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60121196 60121299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60124218 60125251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60125637 60125823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60133970 60134221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3519 nt):
ATGAGTCCAGATGTGCCTCTACTGAATGATTACAAGCAGGACTTCTTTCTGAAGCGCTTTCCACAGACTG
TTCTTGGAGGCCCTCGATTCAAATTAGGCTATTGTGCCCCTCCTTACATATATGTTAATCAAATTATTCT
TTTTCTAATGCCATGGGTTTGGGGTGGAGTCGGAACACTTTTATACCAGTTAGGCATCCTGAAAGACTAT
TATACAGCAGCACTTTCAGGTGGATTAATGCTTTTTACTGCATTTGTCATCCAGTTCACAAGTTTATACG
CCAAAAACAAATCAACAACAGTAGAAAGAATACTAACCACGGATATCTTAGCAGAGGAGGATGAGCATGA
ATTTACCAGTTGTACTGGTGCTGAGACTGTCAAATTTCTCATTCCTGGCAAGAAATATGTAGCCAATACA
GTTTTTCATTCTATTCTTGCTGGATTAGCGTGTGGTCTTGGAACATGGTATCTGCTCCCAAATAGAATAA
CCTTGCTGTATGGCAGTACAGGAGGCACTGCTCTACTATTCTTCTTTGGATGGATGACACTATGTATAGC
AGAATATTCTTTAATTGTAAACACAGCTACAGAGACTGCGACTTTCCAAACACAGGATACTTATGAAATT
ATTCCTCTTATGAGACCTCTTTATATTTTTTTCTTTGTTTCTGTGGATCTGGCACACAGGTTTGTGGTAA
ATATGCCAGCTCTAGAACACATGAATCAGATTTTACACATCTTGTTTGTATTTTTACCCTTTCTGTGGGC
ACTTGGGACTCTGCCCCCACCCGATGCACTTCTCTTATGGGCAATGGAGCAGGTTTTAGAGTTCGGCCTT
GGAGGCTCATCTATGTCAACCCACTTACGGTTATTAGTAATGTTCATCATGTCTGCTGGAACAGCTATAG
CATCATATTTCATTCCAAGCACTGTTGGTGTGGTTCTTTTCATGACTGGATTTGGTTTCTTGCTGAGTCT
GAACTTAAGTGATATGGGTCACAAAATTGGAACCAAATCTAAGGATTTACCCAGTGGTCCGGAAAAACAT
TTTTCATGGAAGGAATGCCTTTTCTACATCATTATATTAGTCTTGGCTCTTTTAGAAACTAGCTTGCTTC
ATCACTTTGCTGGCTTCTCACAGATTTCTAAAAGCAATTCCCAGGCTATTGTGGGCTATGGTTTGATGAT
ATTACTTATAATACTGTGGATACTTAGAGAAATTCAAAGCGTATATATCATTGGAATTTTCCGAAATCCC
TTTTATCCGAAGGATGTGCAAACTGTGACTGTATTCTTTGAGAAGCAAACTAGGCTCATGAAGATTGGTA
TTGTCAGACGGATTTTGCTAACTTTAGTATCACCTTTTGCCATGATAGCATTTCTTTCATTGGACAGTTC
CTTACAAGGGCTCCACTCAGTGTCTGTCTGTATTGGATTCACAAGAGCCTTTAGAATGGTATGGCAGAAT
ACAGAAAATGCTTTATTGGAGACAGTCATTGTATCAACAGTACACTTGATCTCCAGTACAGACATATGGT
GGAACAGAAGCCTGGATACAGGACTCAGACTCTTACTGGTTGGTATCATACGTGATCGTTTGATTCAGTT
CATCTCTAAATTGCAGTTTGCCGTGACTGTGCTTTTGACATCATGGACAGAGAAAAAACAACGTCGAAAA
ACAACTGCCACTTTATGTATACTCAACATTGTCTTTTCTCCATTCGTGTTGGTCATCATAGTTTTTTCTA
CACTACTCTCTTCTCCCTTACTCCCTCTTTTCACCCTTCCTGTGTTCTTGGTGGGGTTTCCCCGACCTAT
TCAGAGTTGGCCAGGAGCAGCAGGCACCACAGCCTGTGTGTGTGCAGATACAGTGTACTACTACCAAATG
GTGCCCAGGTTGACTGCTGTACTGCAGACTGCAATGGCAGCTGGAAGTTTAGGTCTCCTCCTACCTGGAT
CTCATTACTTGGGCCGTTTTCAGGATCGTTTAATGTGGATAATGATTCTGGAATGTGGCTATACTTACTG
CTCTATTAACATTAAGGGGTTAGAATTGCAGGAAACATCCTGTCATACTGCAGAAGCTCGCAGAGTTGAT
GAAGTTTTTGAAGATGCTTTTGAGCAAGAATACACAAGAGTATGTTCCCTTAATGAACACTTTGGAAATG
TCTTGACACCCTGTACTGTTTTGCCTGTGAAATTGTATTCTGATGCCAGGAATGTTCTATCAGGCATAAT
TGATTCTCATGAAAACTTAAAAGAATTTAAAGGTGACCTCATTAAAGTACTTGTGTGGATACTTGTTCAA
TACTGCTCCAAAAGGCCTGGCATGAAAGAGAATGTTCACAACACTGAAAATAAAGGGAAAGCACCTCTAA
TGTTGCCTGCTTTGAACACTTTGCCACCTCCCAAATCCCCAGAAGACATAGACAGTTTAAATTCAGAAAC
TTTTAATGACTGGTCTGATGATAATATTTTTGATGATGAGCCAACTATCAAAAAAGTAATAGAAGAAAAA
CATCAGTTGAAAGATTTGCCAGGTACAAATTTGTTTATTCCAGGATCAGTAGAATCACAGAGGGTTGGTG
ATCATTCTACAGGCACTGTTCCTGAAAACGATCTTTACAAAGCAGTTCTATTAGGATACCCTGCTGTTGA
CAAAGGAAAACAAGAGGACATGCCATATATTCCTCTCATGGAGTTCAGTTGTTCACATTCTCACTTAGTA
TGCTTACCCGCAGAGTGGAGGACTAGCTGTATGCCCAGTTCCAAAATGAAGGAGATGAGCTCGTTATTTC
CAGAAGACTGGTACCAATTTGTTCTAAGGCAGTTGGAATGTTATCATTCAGAAGAGAAGGCCTCAAATGT
ACTGGAAGAAATTGCCAAGGACAAAGTTTTAAAAGACTTTTATGTTCATACAGTAATGACTTGTTATTTT
AGTTTATTTGGAATAGACAATATGGCTCCTAGTCCTGGTCATATATTGAGAGTTTACGGTGGTGTTTTGC
CTTGGTCTGTTGCTTTGGACTGGCTCACAGAAAAGCCAGAACTGTTTCAACTAGCACTGAAAGCATTCAG
GTATACTCTGAAACTAATGATTGATAAAGCAAGTTTAGGTCCAATAGAAGACTTTAGAGAACTGATTAAG
TACCTTGAAGAATATGAACGTGACTGGTACATTGGTTTGGTATCTGATGAAAAGTGGAAGGAAGCAATTT
TACAAGAAAAGCCATACTTGTTTTCTCTGGGGTATGATTCTAATATGGGAATTTACACTGGGAGAGTGCT
TAGCCTTCAAGAATTATTGATCCAAGTGGGAAAGTTAAATCCTGAAGCTGTTAGAGGTCAGTGGGCCAAT
CTTTCATGGGAATTACTTTATGCCACAAACGATGATGAAGAACGTTATAGTATACAAGCTCATCCACTAC
TTTTAAGAAATCTTACGGTACAAGCAGCAGAACCTCCCCTGGGATATCCGATTTATTCTTCAAAACCTCT
CCACATACATTTGTATTAG

Translation (1172 aa):
MSPDVPLLNDYKQDFFLKRFPQTVLGGPRFKLGYCAPPYIYVNQIILFLMPWVWGGVGTLLYQLGILKDY
YTAALSGGLMLFTAFVIQFTSLYAKNKSTTVERILTTDILAEEDEHEFTSCTGAETVKFLIPGKKYVANT
VFHSILAGLACGLGTWYLLPNRITLLYGSTGGTALLFFFGWMTLCIAEYSLIVNTATETATFQTQDTYEI
IPLMRPLYIFFFVSVDLAHRFVVNMPALEHMNQILHILFVFLPFLWALGTLPPPDALLLWAMEQVLEFGL
GGSSMSTHLRLLVMFIMSAGTAIASYFIPSTVGVVLFMTGFGFLLSLNLSDMGHKIGTKSKDLPSGPEKH
FSWKECLFYIIILVLALLETSLLHHFAGFSQISKSNSQAIVGYGLMILLIILWILREIQSVYIIGIFRNP
FYPKDVQTVTVFFEKQTRLMKIGIVRRILLTLVSPFAMIAFLSLDSSLQGLHSVSVCIGFTRAFRMVWQN
TENALLETVIVSTVHLISSTDIWWNRSLDTGLRLLLVGIIRDRLIQFISKLQFAVTVLLTSWTEKKQRRK
TTATLCILNIVFSPFVLVIIVFSTLLSSPLLPLFTLPVFLVGFPRPIQSWPGAAGTTACVCADTVYYYQM
VPRLTAVLQTAMAAGSLGLLLPGSHYLGRFQDRLMWIMILECGYTYCSINIKGLELQETSCHTAEARRVD
EVFEDAFEQEYTRVCSLNEHFGNVLTPCTVLPVKLYSDARNVLSGIIDSHENLKEFKGDLIKVLVWILVQ
YCSKRPGMKENVHNTENKGKAPLMLPALNTLPPPKSPEDIDSLNSETFNDWSDDNIFDDEPTIKKVIEEK
HQLKDLPGTNLFIPGSVESQRVGDHSTGTVPENDLYKAVLLGYPAVDKGKQEDMPYIPLMEFSCSHSHLV
CLPAEWRTSCMPSSKMKEMSSLFPEDWYQFVLRQLECYHSEEKASNVLEEIAKDKVLKDFYVHTVMTCYF
SLFGIDNMAPSPGHILRVYGGVLPWSVALDWLTEKPELFQLALKAFRYTLKLMIDKASLGPIEDFRELIK
YLEEYERDWYIGLVSDEKWKEAILQEKPYLFSLGYDSNMGIYTGRVLSLQELLIQVGKLNPEAVRGQWAN
LSWELLYATNDDEERYSIQAHPLLLRNLTVQAAEPPLGYPIYSSKPLHIHLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH