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Report for CCDS81809.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
81809.1 |
Public |
Homo sapiens |
14 |
PCNX4 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:64430](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:81809.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:64430](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 14 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 81809.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000406854.6 |
ENSP00000384801.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000406854.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000384801.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000406854](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000384801](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001330177.2 |
NP_001317106.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001330177.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001317106.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001330177](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001317106](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001317106.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001317106.1 |
1172 |
Q63HM2 |
1172 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 81809.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3519 nt): ATGAGTCCAGATGTGCCTCTACTGAATGATTACAAGCAGGACTTCTTTCTGAAGCGCTTTCCACAGACTG TTCTTGGAGGCCCTCGATTCAAATTAGGCTATTGTGCCCCTCCTTACATATATGTTAATCAAATTATTCT TTTTCTAATGCCATGGGTTTGGGGTGGAGTCGGAACACTTTTATACCAGTTAGGCATCCTGAAAGACTAT TATACAGCAGCACTTTCAGGTGGATTAATGCTTTTTACTGCATTTGTCATCCAGTTCACAAGTTTATACG CCAAAAACAAATCAACAACAGTAGAAAGAATACTAACCACGGATATCTTAGCAGAGGAGGATGAGCATGA ATTTACCAGTTGTACTGGTGCTGAGACTGTCAAATTTCTCATTCCTGGCAAGAAATATGTAGCCAATACA GTTTTTCATTCTATTCTTGCTGGATTAGCGTGTGGTCTTGGAACATGGTATCTGCTCCCAAATAGAATAA CCTTGCTGTATGGCAGTACAGGAGGCACTGCTCTACTATTCTTCTTTGGATGGATGACACTATGTATAGC AGAATATTCTTTAATTGTAAACACAGCTACAGAGACTGCGACTTTCCAAACACAGGATACTTATGAAATT ATTCCTCTTATGAGACCTCTTTATATTTTTTTCTTTGTTTCTGTGGATCTGGCACACAGGTTTGTGGTAA ATATGCCAGCTCTAGAACACATGAATCAGATTTTACACATCTTGTTTGTATTTTTACCCTTTCTGTGGGC ACTTGGGACTCTGCCCCCACCCGATGCACTTCTCTTATGGGCAATGGAGCAGGTTTTAGAGTTCGGCCTT GGAGGCTCATCTATGTCAACCCACTTACGGTTATTAGTAATGTTCATCATGTCTGCTGGAACAGCTATAG CATCATATTTCATTCCAAGCACTGTTGGTGTGGTTCTTTTCATGACTGGATTTGGTTTCTTGCTGAGTCT GAACTTAAGTGATATGGGTCACAAAATTGGAACCAAATCTAAGGATTTACCCAGTGGTCCGGAAAAACAT TTTTCATGGAAGGAATGCCTTTTCTACATCATTATATTAGTCTTGGCTCTTTTAGAAACTAGCTTGCTTC ATCACTTTGCTGGCTTCTCACAGATTTCTAAAAGCAATTCCCAGGCTATTGTGGGCTATGGTTTGATGAT ATTACTTATAATACTGTGGATACTTAGAGAAATTCAAAGCGTATATATCATTGGAATTTTCCGAAATCCC TTTTATCCGAAGGATGTGCAAACTGTGACTGTATTCTTTGAGAAGCAAACTAGGCTCATGAAGATTGGTA TTGTCAGACGGATTTTGCTAACTTTAGTATCACCTTTTGCCATGATAGCATTTCTTTCATTGGACAGTTC CTTACAAGGGCTCCACTCAGTGTCTGTCTGTATTGGATTCACAAGAGCCTTTAGAATGGTATGGCAGAAT ACAGAAAATGCTTTATTGGAGACAGTCATTGTATCAACAGTACACTTGATCTCCAGTACAGACATATGGT GGAACAGAAGCCTGGATACAGGACTCAGACTCTTACTGGTTGGTATCATACGTGATCGTTTGATTCAGTT CATCTCTAAATTGCAGTTTGCCGTGACTGTGCTTTTGACATCATGGACAGAGAAAAAACAACGTCGAAAA ACAACTGCCACTTTATGTATACTCAACATTGTCTTTTCTCCATTCGTGTTGGTCATCATAGTTTTTTCTA CACTACTCTCTTCTCCCTTACTCCCTCTTTTCACCCTTCCTGTGTTCTTGGTGGGGTTTCCCCGACCTAT TCAGAGTTGGCCAGGAGCAGCAGGCACCACAGCCTGTGTGTGTGCAGATACAGTGTACTACTACCAAATG GTGCCCAGGTTGACTGCTGTACTGCAGACTGCAATGGCAGCTGGAAGTTTAGGTCTCCTCCTACCTGGAT CTCATTACTTGGGCCGTTTTCAGGATCGTTTAATGTGGATAATGATTCTGGAATGTGGCTATACTTACTG CTCTATTAACATTAAGGGGTTAGAATTGCAGGAAACATCCTGTCATACTGCAGAAGCTCGCAGAGTTGAT GAAGTTTTTGAAGATGCTTTTGAGCAAGAATACACAAGAGTATGTTCCCTTAATGAACACTTTGGAAATG TCTTGACACCCTGTACTGTTTTGCCTGTGAAATTGTATTCTGATGCCAGGAATGTTCTATCAGGCATAAT TGATTCTCATGAAAACTTAAAAGAATTTAAAGGTGACCTCATTAAAGTACTTGTGTGGATACTTGTTCAA TACTGCTCCAAAAGGCCTGGCATGAAAGAGAATGTTCACAACACTGAAAATAAAGGGAAAGCACCTCTAA TGTTGCCTGCTTTGAACACTTTGCCACCTCCCAAATCCCCAGAAGACATAGACAGTTTAAATTCAGAAAC TTTTAATGACTGGTCTGATGATAATATTTTTGATGATGAGCCAACTATCAAAAAAGTAATAGAAGAAAAA CATCAGTTGAAAGATTTGCCAGGTACAAATTTGTTTATTCCAGGATCAGTAGAATCACAGAGGGTTGGTG ATCATTCTACAGGCACTGTTCCTGAAAACGATCTTTACAAAGCAGTTCTATTAGGATACCCTGCTGTTGA CAAAGGAAAACAAGAGGACATGCCATATATTCCTCTCATGGAGTTCAGTTGTTCACATTCTCACTTAGTA TGCTTACCCGCAGAGTGGAGGACTAGCTGTATGCCCAGTTCCAAAATGAAGGAGATGAGCTCGTTATTTC CAGAAGACTGGTACCAATTTGTTCTAAGGCAGTTGGAATGTTATCATTCAGAAGAGAAGGCCTCAAATGT ACTGGAAGAAATTGCCAAGGACAAAGTTTTAAAAGACTTTTATGTTCATACAGTAATGACTTGTTATTTT AGTTTATTTGGAATAGACAATATGGCTCCTAGTCCTGGTCATATATTGAGAGTTTACGGTGGTGTTTTGC CTTGGTCTGTTGCTTTGGACTGGCTCACAGAAAAGCCAGAACTGTTTCAACTAGCACTGAAAGCATTCAG GTATACTCTGAAACTAATGATTGATAAAGCAAGTTTAGGTCCAATAGAAGACTTTAGAGAACTGATTAAG TACCTTGAAGAATATGAACGTGACTGGTACATTGGTTTGGTATCTGATGAAAAGTGGAAGGAAGCAATTT TACAAGAAAAGCCATACTTGTTTTCTCTGGGGTATGATTCTAATATGGGAATTTACACTGGGAGAGTGCT TAGCCTTCAAGAATTATTGATCCAAGTGGGAAAGTTAAATCCTGAAGCTGTTAGAGGTCAGTGGGCCAAT CTTTCATGGGAATTACTTTATGCCACAAACGATGATGAAGAACGTTATAGTATACAAGCTCATCCACTAC TTTTAAGAAATCTTACGGTACAAGCAGCAGAACCTCCCCTGGGATATCCGATTTATTCTTCAAAACCTCT CCACATACATTTGTATTAG
Translation (1172 aa): MSPDVPLLNDYKQDFFLKRFPQTVLGGPRFKLGYCAPPYIYVNQIILFLMPWVWGGVGTLLYQLGILKDY YTAALSGGLMLFTAFVIQFTSLYAKNKSTTVERILTTDILAEEDEHEFTSCTGAETVKFLIPGKKYVANT VFHSILAGLACGLGTWYLLPNRITLLYGSTGGTALLFFFGWMTLCIAEYSLIVNTATETATFQTQDTYEI IPLMRPLYIFFFVSVDLAHRFVVNMPALEHMNQILHILFVFLPFLWALGTLPPPDALLLWAMEQVLEFGL GGSSMSTHLRLLVMFIMSAGTAIASYFIPSTVGVVLFMTGFGFLLSLNLSDMGHKIGTKSKDLPSGPEKH FSWKECLFYIIILVLALLETSLLHHFAGFSQISKSNSQAIVGYGLMILLIILWILREIQSVYIIGIFRNP FYPKDVQTVTVFFEKQTRLMKIGIVRRILLTLVSPFAMIAFLSLDSSLQGLHSVSVCIGFTRAFRMVWQN TENALLETVIVSTVHLISSTDIWWNRSLDTGLRLLLVGIIRDRLIQFISKLQFAVTVLLTSWTEKKQRRK TTATLCILNIVFSPFVLVIIVFSTLLSSPLLPLFTLPVFLVGFPRPIQSWPGAAGTTACVCADTVYYYQM VPRLTAVLQTAMAAGSLGLLLPGSHYLGRFQDRLMWIMILECGYTYCSINIKGLELQETSCHTAEARRVD EVFEDAFEQEYTRVCSLNEHFGNVLTPCTVLPVKLYSDARNVLSGIIDSHENLKEFKGDLIKVLVWILVQ YCSKRPGMKENVHNTENKGKAPLMLPALNTLPPPKSPEDIDSLNSETFNDWSDDNIFDDEPTIKKVIEEK HQLKDLPGTNLFIPGSVESQRVGDHSTGTVPENDLYKAVLLGYPAVDKGKQEDMPYIPLMEFSCSHSHLV CLPAEWRTSCMPSSKMKEMSSLFPEDWYQFVLRQLECYHSEEKASNVLEEIAKDKVLKDFYVHTVMTCYF SLFGIDNMAPSPGHILRVYGGVLPWSVALDWLTEKPELFQLALKAFRYTLKLMIDKASLGPIEDFRELIK YLEEYERDWYIGLVSDEKWKEAILQEKPYLFSLGYDSNMGIYTGRVLSLQELLIQVGKLNPEAVRGQWAN LSWELLYATNDDEERYSIQAHPLLLRNLTVQAAEPPLGYPIYSSKPLHIHLY
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