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Report for CCDS82252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82252.1 Public Homo sapiens 18 SLC14A1 24 110 108 CCDS HistoryNCBI Gene:6563Re-query CCDS DB by CCDS ID:82252.1Re-query CCDS DB by GeneID:6563See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82252.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402943.6 ENSP00000385320.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402943.6Link to Ensembl Protein Viewer:ENSP00000385320.2Re-query CCDS DB by Nucleotide ID:ENST00000402943Re-query CCDS DB by Protein ID:ENSP00000385320
Original member Current member NCBI NM_001308278.2 NP_001295207.1 Accepted alive Link to Nucleotide Sequence:NM_001308278.2Link to Protein Sequence:NP_001295207.1Re-query CCDS DB by Nucleotide ID:NM_001308278Re-query CCDS DB by Protein ID:NP_001295207Link to BLAST:NP_001295207.1

Chromosomal Locations for CCDS 82252.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 45731179 45731204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45734274 45734402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45736456 45736648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45739163 45739310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45739528 45739662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45748376 45748425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45749778 45749951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGCCCTCTTGCTCAGCCAGGACAGGTCATTAATAGCATCTGGGCTCTATGGCTACAATGCCACCCTGG
TGGGAGTACTCATGGCTGTCTTTTCGGACAAGGGAGACTATTTCTGGTGGCTGTTACTCCCTGTATGTGC
TATGTCCATGACTTGCCCAATTTTCTCAAGTGCATTGAATTCCATGCTCAGCAAATGGGACCTCCCCGTC
TTCACCCTCCCTTTCAACATGGCGTTGTCAATGTACCTTTCAGCCACAGGACATTACAATCCATTCTTTC
CAGCCAAACTGGTCATACCTATAACTACAGCTCCAAATATCTCCTGGTCTGACCTCAGTGCCCTGGAGTT
GTTGAAATCTATACCAGTGGGAGTTGGTCAGATCTATGGCTGTGATAATCCATGGACAGGGGGCATTTTC
CTGGGAGCCATCCTACTCTCCTCCCCACTCATGTGCCTGCATGCTGCCATAGGATCATTGCTGGGCATAG
CAGCGGGACTCAGTCTTTCAGCCCCATTTGAGGACATCTACTTTGGACTCTGGGGTTTCAACAGCTCTCT
GGCCTGCATTGCAATGGGAGGAATGTTCATGGCGCTCACCTGGCAAACCCACCTCCTGGCTCTTGGCTGT
GCCCTGTTCACGGCCTATCTTGGAGTCGGCATGGCAAACTTTATGGCTGAGGTTGGATTGCCAGCTTGTA
CCTGGCCCTTCTGTTTGGCCACGCTATTGTTCCTCATCATGACCACAAAAAATTCCAACATCTACAAGAT
GCCCCTCAGTAAAGTTACTTATCCTGAAGAAAACCGCATCTTCTACCTGCAAGCCAAGAAAAGAATGGTG
GAAAGCCCTTTGTGA

Translation (284 aa):
MALLLSQDRSLIASGLYGYNATLVGVLMAVFSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLPV
FTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIF
LGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFEDIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGC
ALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYLQAKKRMV
ESPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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