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Report for CCDS8236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8236.1 Public Homo sapiens 11 RPS3 24 110 108 CCDS HistoryNCBI Gene:6188Re-query CCDS DB by CCDS ID:8236.1Re-query CCDS DB by GeneID:6188See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8236.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524851.5 ENSP00000433821.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524851.5Link to Ensembl Protein Viewer:ENSP00000433821.1Re-query CCDS DB by Nucleotide ID:ENST00000524851Re-query CCDS DB by Protein ID:ENSP00000433821
Original member Current member EBI ENST00000531188.6 ENSP00000434643.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000531188.6Link to Ensembl Protein Viewer:ENSP00000434643.1Re-query CCDS DB by Nucleotide ID:ENST00000531188Re-query CCDS DB by Protein ID:ENSP00000434643
Original member Current member EBI ENST00000527446.5 ENSP00000436971.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527446.5Link to Ensembl Protein Viewer:ENSP00000436971.1Re-query CCDS DB by Nucleotide ID:ENST00000527446Re-query CCDS DB by Protein ID:ENSP00000436971
Original member Current member NCBI NM_001005.5 NP_000996.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005.5Link to Protein Sequence:NP_000996.2Re-query CCDS DB by Nucleotide ID:NM_001005Re-query CCDS DB by Protein ID:NP_000996Link to BLAST:NP_000996.2
Original member Current member NCBI NM_001256802.2 NP_001243731.1 Accepted alive Link to Nucleotide Sequence:NM_001256802.2Link to Protein Sequence:NP_001243731.1Re-query CCDS DB by Nucleotide ID:NM_001256802Re-query CCDS DB by Protein ID:NP_001243731Link to BLAST:NP_001243731.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000996.2 243 P23396-1 243 100% 0 0
NP_001243731.1 243 P23396-1 243 100% 0 0

Chromosomal Locations for CCDS 8236.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75399548 75399577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75400694 75400824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75401640 75401733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75402352 75402446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75404020 75404207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75404672 75404865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCAGTGCAAATATCCAAGAAGAGGAAGTTTGTCGCTGATGGCATCTTCAAAGCTGAACTGAATGAGT
TTCTTACTCGGGAGCTGGCTGAAGATGGCTACTCTGGAGTTGAGGTGCGAGTTACACCAACCAGGACAGA
AATCATTATCTTAGCCACCAGAACACAGAATGTTCTTGGTGAGAAGGGCCGGCGGATTCGGGAACTGACT
GCTGTAGTTCAGAAGAGGTTTGGCTTTCCAGAGGGCAGTGTAGAGCTTTATGCTGAAAAGGTGGCCACTA
GAGGTCTGTGTGCCATTGCCCAGGCAGAGTCTCTGCGTTACAAACTCCTAGGAGGGCTTGCTGTGCGGAG
GGCCTGCTATGGTGTGCTGCGGTTCATCATGGAGAGTGGGGCCAAAGGCTGCGAGGTTGTGGTGTCTGGG
AAACTCCGAGGACAGAGGGCTAAATCCATGAAGTTTGTGGATGGCCTGATGATCCACAGCGGAGACCCTG
TTAACTACTACGTTGACACTGCTGTGCGCCACGTGTTGCTCAGACAGGGTGTGCTGGGCATCAAGGTGAA
GATCATGCTGCCCTGGGACCCAACTGGTAAGATTGGCCCTAAGAAGCCCCTGCCTGACCACGTGAGCATT
GTGGAACCCAAAGATGAGATACTGCCCACCACCCCCATCTCAGAACAGAAGGGTGGGAAGCCAGAGCCGC
CTGCCATGCCCCAGCCAGTCCCCACAGCATAA

Translation (243 aa):
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELT
AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSG
KLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSI
VEPKDEILPTTPISEQKGGKPEPPAMPQPVPTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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