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Report for CCDS8238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8238.1 Public Homo sapiens 11 GDPD5 24 110 108 CCDS HistoryNCBI Gene:81544Re-query CCDS DB by CCDS ID:8238.1Re-query CCDS DB by GeneID:81544See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8238.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336898.8 ENSP00000337972.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336898.8Link to Ensembl Protein Viewer:ENSP00000337972.3Re-query CCDS DB by Nucleotide ID:ENST00000336898Re-query CCDS DB by Protein ID:ENSP00000337972
Original member Current member EBI ENST00000529721.5 ENSP00000433214.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529721.5Link to Ensembl Protein Viewer:ENSP00000433214.1Re-query CCDS DB by Nucleotide ID:ENST00000529721Re-query CCDS DB by Protein ID:ENSP00000433214
Original member Current member NCBI NM_030792.8 NP_110419.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030792.8Link to Protein Sequence:NP_110419.5Re-query CCDS DB by Nucleotide ID:NM_030792Re-query CCDS DB by Protein ID:NP_110419Link to BLAST:NP_110419.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110419.5 605 Q8WTR4-1 605 100% 0 0

Chromosomal Locations for CCDS 8238.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75435507 75435655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75436936 75437048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75439879 75439961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75441163 75441310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75441646 75441803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75442363 75442581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75443136 75443286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75444413 75444495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75448977 75449122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75449517 75449610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75449885 75449983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75456757 75456816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75457693 75457786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75462786 75462889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75477619 75477735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1818 nt):
ATGGTGAGACACCAGCCCCTGCAGTACTACGAGCCACAGCTGTGCCTCTCCTGCCTCACGGGCATCTACG
GCTGCCGTTGGAAGCGCTACCAGCGCTCCCATGATGATACCACACCGTGGGAGCGCCTCTGGTTCCTGCT
CCTCACCTTCACCTTTGGCCTCACGCTCACCTGGCTTTACTTCTGGTGGGAAGTCCACAATGACTATGAT
GAATTCAACTGGTACCTCTACAACCGCATGGGCTACTGGAGCGACTGGCCCGTACCCATCCTTGTGACCA
CAGCTGCTGCCTTCGCATACATCGCTGGCCTCCTGGTCCTGGCACTATGTCACATTGCCGTGGGGCAGCA
GATGAACCTGCACTGGCTGCACAAGATCGGGCTGGTGGTCATCCTGGCTTCCACGGTGGTGGCCATGTCG
GCCGTGGCCCAGCTGTGGGAGGACGAGTGGGAGGTGCTGCTGATCTCCCTGCAGGGCACAGCGCCATTCC
TGCATGTGGGGGCTGTGGCAGCAGTCACCATGCTCTCCTGGATCGTGGCAGGACAGTTCGCCCGCGCAGA
GCGGACCTCCTCCCAGGTGACCATTCTCTGTACCTTCTTCACCGTGGTGTTTGCCCTCTACCTGGCCCCT
CTCACCATCTCCTCTCCCTGCATCATGGAGAAGAAAGACCTCGGCCCCAAGCCTGCTCTCATTGGCCACC
GCGGGGCCCCCATGCTGGCTCCAGAGCACACGCTCATGTCCTTCCGGAAGGCCCTCGAGCAGAAGCTGTA
CGGGCTCCAGGCTGACATTACCATCAGCCTGGACGGCGTGCCCTTCCTCATGCATGACACCACCCTGCGG
CGCACCACCAACGTGGAGGAGGAGTTCCCGGAGCTGGCCCGCAGGCCTGCCTCCATGCTTAACTGGACCA
CCCTGCAGAGACTCAACGCTGGCCAGTGGTTCCTGAAGACTGACCCCTTCTGGACAGCCAGCTCCCTGTC
ACCCTCCGACCACAGAGAGGCCCAGAACCAGTCCATCTGCAGCCTGGCAGAGCTCCTGGAGCTGGCCAAG
GGCAATGCCACACTGCTGCTCAACCTGCGTGACCCGCCCCGGGAGCACCCCTACCGCAGCAGTTTTATCA
ACGTGACTCTGGAGGCCGTGCTGCACTCCGGCTTCCCCCAGCACCAGGTCATGTGGCTGCCTAGCAGGCA
GAGGCCCCTGGTGCGGAAGGTGGCTCCCGGCTTCCAACAGACATCAGGCTCCAAGGAGGCAGTCGCCAGC
CTGCGGAGAGGCCACATCCAGCGGCTGAACCTGCGCTACACTCAGGTGTCCCGCCAGGAGCTCAGGGACT
ACGCGTCCTGGAACCTGAGTGTGAACCTCTACACAGTCAACGCACCGTGGCTCTTCTCCCTGCTGTGGTG
TGCGGGGGTCCCATCCGTCACCTCTGACAACTCCCACGCCCTGTCCCAGGTGCCTTCCCCCCTCTGGATC
ATGCCCCCGGACGAGTACTGTCTCATGTGGGTCACTGCCGACCTGGTCTCCTTCACCCTCATCGTGGGCA
TCTTCGTGCTCCAGAAGTGGCGCCTGGGTGGCATACGGAGCTACAACCCTGAGCAGATCATGCTGAGTGC
TGCGGTGCGCCGGACCAGCCGGGACGTCAGCATCATGAAGGAGAAGCTTATTTTCTCAGAGATCAGCGAT
GGTGTAGAGGTCTCCGATGTGCTCTCCGTATGTTCAGACAACAGTTATGACACATATGCCAACAGCACCG
CCACCCCTGTGGGCCCCCGAGGGGGTGGCAGCCACACCAAGACCCTCATAGAGCGGAGTGGGCGTTAG

Translation (605 aa):
MVRHQPLQYYEPQLCLSCLTGIYGCRWKRYQRSHDDTTPWERLWFLLLTFTFGLTLTWLYFWWEVHNDYD
EFNWYLYNRMGYWSDWPVPILVTTAAAFAYIAGLLVLALCHIAVGQQMNLHWLHKIGLVVILASTVVAMS
AVAQLWEDEWEVLLISLQGTAPFLHVGAVAAVTMLSWIVAGQFARAERTSSQVTILCTFFTVVFALYLAP
LTISSPCIMEKKDLGPKPALIGHRGAPMLAPEHTLMSFRKALEQKLYGLQADITISLDGVPFLMHDTTLR
RTTNVEEEFPELARRPASMLNWTTLQRLNAGQWFLKTDPFWTASSLSPSDHREAQNQSICSLAELLELAK
GNATLLLNLRDPPREHPYRSSFINVTLEAVLHSGFPQHQVMWLPSRQRPLVRKVAPGFQQTSGSKEAVAS
LRRGHIQRLNLRYTQVSRQELRDYASWNLSVNLYTVNAPWLFSLLWCAGVPSVTSDNSHALSQVPSPLWI
MPPDEYCLMWVTADLVSFTLIVGIFVLQKWRLGGIRSYNPEQIMLSAAVRRTSRDVSIMKEKLIFSEISD
GVEVSDVLSVCSDNSYDTYANSTATPVGPRGGGSHTKTLIERSGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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