NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8240.1 Public Homo sapiens 11 MOGAT2 24 110 108 CCDS HistoryNCBI Gene:80168Re-query CCDS DB by CCDS ID:8240.1Re-query CCDS DB by GeneID:80168See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000198801.10 ENSP00000198801.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000198801.10Link to Ensembl Protein Viewer:ENSP00000198801.5Re-query CCDS DB by Nucleotide ID:ENST00000198801Re-query CCDS DB by Protein ID:ENSP00000198801
Original member Current member NCBI NM_025098.4 NP_079374.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025098.4Link to Protein Sequence:NP_079374.2Re-query CCDS DB by Nucleotide ID:NM_025098Re-query CCDS DB by Protein ID:NP_079374Link to BLAST:NP_079374.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079374.2 334 Q3SYC2-1 334 100% 0 0

Chromosomal Locations for CCDS 8240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75717889 75717979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75719992 75720170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75727435 75727639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75727970 75728144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75728790 75728989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75731132 75731286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGTAGAGTTCGCGCCCTTGTTTATGCCGTGGGAGCGCAGGCTGCAGACACTTGCTGTCCTACAGTTTG
TCTTCTCCTTCTTGGCACTGGCCGAGATCTGCACTGTGGGCTTCATAGCCCTCCTGTTTACAAGATTCTG
GCTCCTCACTGTCCTGTATGCGGCCTGGTGGTATCTGGACCGAGACAAGCCACGGCAGGGGGGCCGGCAC
ATCCAGGCCATCAGGTGCTGGACTATATGGAAGTACATGAAGGACTATTTCCCCATCTCGCTGGTCAAGA
CTGCTGAGCTGGACCCCTCTCGGAACTACATTGCGGGCTTCCACCCCCATGGAGTCCTGGCAGTCGGAGC
CTTTGCCAACCTGTGCACTGAGAGCACAGGCTTCTCTTCGATCTTCCCCGGTATCCGCCCCCATCTGATG
ATGCTGACCTTGTGGTTCCGGGCCCCCTTCTTCAGAGATTACATCATGTCTGCAGGGTTGGTCACATCAG
AAAAGGAGAGTGCTGCTCACATTCTGAACAGGAAGGGTGGCGGAAACTTGCTGGGCATCATTGTAGGGGG
TGCCCAGGAGGCCCTGGATGCCAGGCCTGGATCCTTCACGCTGTTACTGCGGAACCGAAAGGGCTTCGTC
AGGCTCGCCCTGACACACGGGGCACCCCTGGTGCCAATCTTCTCCTTCGGGGAGAATGACCTATTTGACC
AGATTCCCAACTCTTCTGGCTCCTGGTTACGCTATATCCAGAATCGGTTGCAGAAGATCATGGGCATCTC
CCTCCCACTCTTTCATGGCCGTGGTGTCTTCCAGTACAGCTTTGGTTTAATACCCTACCGCCGGCCCATC
ACCACTGTGGTGGGGAAGCCCATCGAGGTACAGAAGACGCTGCATCCCTCGGAGGAGGAGGTGAACCAGC
TGCACCAGCGTTATATCAAAGAGCTGTGCAACCTCTTCGAGGCCCACAAACTTAAGTTCAACATCCCTGC
TGACCAGCACTTGGAGTTCTGCTGA

Translation (334 aa):
MVEFAPLFMPWERRLQTLAVLQFVFSFLALAEICTVGFIALLFTRFWLLTVLYAAWWYLDRDKPRQGGRH
IQAIRCWTIWKYMKDYFPISLVKTAELDPSRNYIAGFHPHGVLAVGAFANLCTESTGFSSIFPGIRPHLM
MLTLWFRAPFFRDYIMSAGLVTSEKESAAHILNRKGGGNLLGIIVGGAQEALDARPGSFTLLLRNRKGFV
RLALTHGAPLVPIFSFGENDLFDQIPNSSGSWLRYIQNRLQKIMGISLPLFHGRGVFQYSFGLIPYRRPI
TTVVGKPIEVQKTLHPSEEEVNQLHQRYIKELCNLFEAHKLKFNIPADQHLEFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH