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Report for CCDS82413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82413.1 Public Homo sapiens 19 ZNF544 24 110 108 CCDS HistoryNCBI Gene:27300Re-query CCDS DB by CCDS ID:82413.1Re-query CCDS DB by GeneID:27300See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82413.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000600220.5 ENSP00000471684.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600220.5Link to Ensembl Protein Viewer:ENSP00000471684.1Re-query CCDS DB by Nucleotide ID:ENST00000600220Re-query CCDS DB by Protein ID:ENSP00000471684
Original member Current member EBI ENST00000600044.5 ENSP00000472721.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600044.5Link to Ensembl Protein Viewer:ENSP00000472721.1Re-query CCDS DB by Nucleotide ID:ENST00000600044Re-query CCDS DB by Protein ID:ENSP00000472721
Original member Current member NCBI NM_001320770.2 NP_001307699.1 Accepted alive Link to Nucleotide Sequence:NM_001320770.2Link to Protein Sequence:NP_001307699.1Re-query CCDS DB by Nucleotide ID:NM_001320770Re-query CCDS DB by Protein ID:NP_001307699Link to BLAST:NP_001307699.1
Original member Current member NCBI NM_001320771.2 NP_001307700.1 Accepted alive Link to Nucleotide Sequence:NM_001320771.2Link to Protein Sequence:NP_001307700.1Re-query CCDS DB by Nucleotide ID:NM_001320771Re-query CCDS DB by Protein ID:NP_001307700Link to BLAST:NP_001307700.1
Original member Current member NCBI NM_001320773.2 NP_001307702.1 Accepted alive Link to Nucleotide Sequence:NM_001320773.2Link to Protein Sequence:NP_001307702.1Re-query CCDS DB by Nucleotide ID:NM_001320773Re-query CCDS DB by Protein ID:NP_001307702Link to BLAST:NP_001307702.1

Chromosomal Locations for CCDS 82413.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58244024 58244056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58246301 58246427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58260851 58262754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGGAAGCACGTTCTATGCTGGTTCCACCCCAGGCATCTGTGTGCTTCGAGGATGTGGCTATGGCATTCA
CA
CAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTG
G
GAGCATATTGTCTCCCTGGACTGGAAAGCTACCCTTGAGGAGAATAGGTTGAATTCTGAAAAAGATCGA
GCT
AGGGAAGAACTATCCCACCACGTGGAAGTGTACAGGAGTGGACCGGAGGAGCCACCCTCTTTGGTAT
TA
GGAAAAGTGCAAGATCAGAGCAACCAGTTAAGGGAACACCAGGAGAACTCCTTGAGGTTCATGGTACT
C
ACCTCAGAGAGACTGTTTGCTCAAAGGGAACATTGTGAGCTTGAACTTGGGGGAGGTTATTCTCTACCT
TCT
ACTTTAAGCCTTCTACCTACAACATTACCTACAAGTACAGGTTTCCCTAAGCCCAACTCACAAGTTA
AA
GAGTTGAAACAAAATTCAGCTTTCATTAATCATGAGAAAAATGGAGCAGATGGGAAGCACTGTGAGAG
T
CATCAGTGTGCTAGAGCTTTCTGTCAGAGTATTTACTTGAGTAAACTTGGAAACGTTGAAACAGGAAAG
AAA
AACCCTTATGAATATATTGTCAGTGGTGACTCTCTCAACTATGGTTCCTCCCTTTGTTTTCATGGTA
GA
ACTTTTTCAGTGAAGAAAAGTGATGACTGTAAGGATTATGGAAACCTCTTCAGTCACAGTGTGTCTCT
G
AATGAACAGAAGCCAGTGCATTTTGGGAAAAGTCAGTATGAGTGTGATGAGTGCAGGGAAACCTGTTCT
GAG
AGTCTGTGCCTTGTACAAACAGAAAGAAGTGGCCCTGGAGAGACCCCCTTCAGATGTGAGGAACGCT
GT
GCTGCCTTCCCCATGGCCTCATCTTTTTCTGACTGTAACATCATTCAGACTACAGAGAAGCCATCTGT
G
TGTAATCAGTGTGGAAAATCTTTCAGCTGTTGTAAGCTCATACACCAGAGAACACACACTGGAGAAAAG
CCC
TTCGAATGTACTCAGTGTGGGAAATCTTTTAGCCAGAGCTATGACCTTGTCATACATCAGAGGACAC
AC
ACTGGAGAGAAGCCCTATGAGTGTGACCTGTGTGGGAAATCCTTCACCCAGAGATCCAAACTTATTAC
A
CATCAGCGAATTCACACTGGAGAAAAACCGTATCAGTGTATTGAATGCAGAAAATCCTTCAGGTGGAAC
TCT
AACCTCATTGTACATCAGAGAATTCATACTGGAGAGAAACCGTATGAGTGCACTCACTGTGGAAAGT
CC
TTCAGCCAAAGCTATGAGTTAGTTACACATAAAAGAACGCACACTGGAGAAAAACCCTTCAAATGTAC
T
CAGTGTGGGAAATCTTTCAGCCAGAAGTATGACCTTGTTGTACATCAGAGGACACACACTGGAGAGAAG
CCC
TATGAGTGCAACCTGTGTGGGAAATCCTTCTCCCAGAGTTCCAAACTTATTACGCATCAGCGAATTC
AC
ACTGGAGAAAAACCGTATCAGTGTATTGAATGTGGGAAATCCTTCAGATGGAACTCTAACCTCGTCAT
A
CATCAGAGAATTCATACTGGAGAGAAACCGTACGATTGCACTCACTGTGGAAAGTCCTTCAGCCAAAGC
TAT
CAGTTAGTTGCACATAAAAGAACTCACACTGGAGAAAAGCCCTATGAATGTAACGAGTGTGGAAAAG
CC
TTCAATCGAAGCACTCAGCTCATCAGGCATCTGCAAATTCACACTGGGGAGAAGCCGTACAAATGCAA
T
CAGTGCAATAAAGCCTTTGCAAGGAGCTCCTACCTTGTGATGCATCAGAGAACTCACACTGGTGAGAAA
CCT
TTTGAGTGTAGTCAGTGTGGGAAAGCCTTTTCAGGGAGCTCTAACCTTCTTTCCCATCACAGAATTC
AT
TCTGGAGAGAAACCCTATGAATGTAGTGACTGTGGGAAATCCTTCCGGCAGCAATCTCAACTTGTAGT
G
CATCGGCGGACACATACTGGAGAGAAACCTTAG


Translation (687 aa):
MEARSMLVPPQASVCFEDVAMAFTQEEWEQLDLAQRTLYREVTLETWEHIVSLDWKATLEENRLNSEKDR
A
REELSHHVEVYRSGPEEPPSLVLGKVQDQSNQLREHQENSLRFMVLTSERLFAQREHCELELGGGYSLP
S
TLSLLPTTLPTSTGFPKPNSQVKELKQNSAFINHEKNGADGKHCESHQCARAFCQSIYLSKLGNVETGK
K
NPYEYIVSGDSLNYGSSLCFHGRTFSVKKSDDCKDYGNLFSHSVSLNEQKPVHFGKSQYECDECRETCS
E
SLCLVQTERSGPGETPFRCEERCAAFPMASSFSDCNIIQTTEKPSVCNQCGKSFSCCKLIHQRTHTGEK
P
FECTQCGKSFSQSYDLVIHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTGEKPYQCIECRKSFRWN
S
NLIVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTGEKPFKCTQCGKSFSQKYDLVVHQRTHTGEK
P
YECNLCGKSFSQSSKLITHQRIHTGEKPYQCIECGKSFRWNSNLVIHQRIHTGEKPYDCTHCGKSFSQS
Y
QLVAHKRTHTGEKPYECNECGKAFNRSTQLIRHLQIHTGEKPYKCNQCNKAFARSSYLVMHQRTHTGEK
P
FECSQCGKAFSGSSNLLSHHRIHSGEKPYECSDCGKSFRQQSQLVVHRRTHTGEKP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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