NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS82471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82471.1 Public Homo sapiens 2 TPRKB 24 110 108 CCDS HistoryNCBI Gene:51002Re-query CCDS DB by CCDS ID:82471.1Re-query CCDS DB by GeneID:51002See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318190.7 ENSP00000325398.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000318190.7Link to Ensembl Protein Viewer:ENSP00000325398.7Re-query CCDS DB by Nucleotide ID:ENST00000318190Re-query CCDS DB by Protein ID:ENSP00000325398
Original member Current member EBI ENST00000409716.6 ENSP00000386936.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409716.6Link to Ensembl Protein Viewer:ENSP00000386936.2Re-query CCDS DB by Nucleotide ID:ENST00000409716Re-query CCDS DB by Protein ID:ENSP00000386936
Original member Current member NCBI NM_001330386.2 NP_001317315.1 Accepted alive Link to Nucleotide Sequence:NM_001330386.2Link to Protein Sequence:NP_001317315.1Re-query CCDS DB by Nucleotide ID:NM_001330386Re-query CCDS DB by Protein ID:NP_001317315Link to BLAST:NP_001317315.1
Original member Current member NCBI NM_001330387.2 NP_001317316.1 Accepted alive Link to Nucleotide Sequence:NM_001330387.2Link to Protein Sequence:NP_001317316.1Re-query CCDS DB by Nucleotide ID:NM_001330387Re-query CCDS DB by Protein ID:NP_001317316Link to BLAST:NP_001317316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317315.1 214 Q9Y3C4-3 214 100% 0 0
NP_001317316.1 214 Q9Y3C4-3 214 100% 0 0

Chromosomal Locations for CCDS 82471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73729943 73730029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73730560 73730736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73732163 73732285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73732584 73732700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73734429 73734569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGCAGTTAACACATCAGCTGGACCTATTTCCCGAATGCAGGGTAACCCTTCTGTTATTTAAAGATGTAA
AA
AATGCGGGAGACTTGAGAAGAAAGGCCATGGAAGGCACCATCGATGGATCACTGATAAATCCTACAGT
G
TTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCGATCTTGGCTCACGGCAACCTCTGCCTCCCGG
GTT
CAAGCAATTGTCCTGCCTCAGCCTCCTGAGTTGCTGGGATTACAGATTGTTGATCCATTTCAGATAC
TT
GTGGCAGCAAACAAAGCAGTTCACCTCTACAAACTGGGAAAAATGAAGACAAGAACTCTATCTACTGA
A
ATTATTTTCAACCTTTCCCCAAATAACAATATTTCAGAGGCTTTGAAAAAATTTGGTATCTCAGCAAAT
GAC
ACTTCAATTCTAATTGTTTACATTGAAGAGGGAGAAAAACAAATAAATCAAGAATACCTAATATCTC
AA
GTAGAAGGTCATCAGGTTTCTCTGAAAAATCTTCCTGAAATAATGAATATTACAGAAGTCAAAAAGAT
A
TATAAACTCTCTTCACAAGAAGAAAGTATTGGGACATTATTGGATGCTATCATTTGTAGAATGTCAACA
AAA
GATGTTTTATGA


Translation (214 aa):
MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVFHSCCPGWSAMARSWLTATSASR
V
QAIVLPQPPELLGLQ
IVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISAN
D
TSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITEVKK
IYKLSSQEESIGTLLDAIICRMST
K
DVL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

External link. Please review our privacy policy.
HHS Vulnerability Disclosure