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Report for CCDS82685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82685.1 Public Homo sapiens 21 YBEY 24 110 108 CCDS HistoryNCBI Gene:54059Re-query CCDS DB by CCDS ID:82685.1Re-query CCDS DB by GeneID:54059See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82685.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397694.5 ENSP00000380808.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397694.5Link to Ensembl Protein Viewer:ENSP00000380808.1Re-query CCDS DB by Nucleotide ID:ENST00000397694Re-query CCDS DB by Protein ID:ENSP00000380808
Original member Current member NCBI NM_001314023.2 NP_001300952.1 Accepted alive Link to Nucleotide Sequence:NM_001314023.2Link to Protein Sequence:NP_001300952.1Re-query CCDS DB by Nucleotide ID:NM_001314023Re-query CCDS DB by Protein ID:NP_001300952Link to BLAST:NP_001300952.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300952.1 122 P58557-3 122 100% 0 0

Chromosomal Locations for CCDS 82685.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 46286914 46286988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 46291334 46291462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 46296162 46296230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 46297539 46297634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (369 nt):
ATGAGTTTGGTGATTAGAAATCTGCAGCGAGTCATCCCCATCAGGAGAGCGCCACTTCGCAGTAAGATCG
AGATTCATCTGAAAGCAGGTGAATTTCCCCAGCCTGATTTTCCAGATGACTACAATTTGGGAGACATTTT
CCTAGGAGTGGAGTATATCTTCCATCAGTGTAAAGAAAATGAAGATTACAATGACGTCCTGACTGTGACG
GCCACCCACGGACTCTGTCACTTGCTGGGATTCACACACGGCACGGAGGCAGAGTGGCAGCAGATGTTCC
AGAAGGAGAAGGCGGTGCTGGACGAGCTGGGCCGACGCACGGGGACCCGGCTGCAGCCCCTGACCCGGGG
CCTCTTCGGAGGGAGCTGA

Translation (122 aa):
MSLVIRNLQRVIPIRRAPLRSKIEIHLKAGEFPQPDFPDDYNLGDIFLGVEYIFHQCKENEDYNDVLTVT
ATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELGRRTGTRLQPLTRGLFGGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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