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Report for CCDS82708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82708.1 Public Homo sapiens 22 SLC35E4 24 110 108 CCDS HistoryNCBI Gene:339665Re-query CCDS DB by CCDS ID:82708.1Re-query CCDS DB by GeneID:339665See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82708.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406566.1 ENSP00000384377.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406566.1Link to Ensembl Protein Viewer:ENSP00000384377.1Re-query CCDS DB by Nucleotide ID:ENST00000406566Re-query CCDS DB by Protein ID:ENSP00000384377
Original member Current member NCBI NM_001318370.2 NP_001305299.1 Accepted alive Link to Nucleotide Sequence:NM_001318370.2Link to Protein Sequence:NP_001305299.1Re-query CCDS DB by Nucleotide ID:NM_001318370Re-query CCDS DB by Protein ID:NP_001305299Link to BLAST:NP_001305299.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305299.1 234 Q6ICL7-2 234 100% 0 0

Chromosomal Locations for CCDS 82708.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30636451 30637069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30649160 30649245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGTGCCGCTGCCCGCCGGAGCACCATGATGGCAGGATGACCTCAGCCGAAGTAGGAGCAGCAGCTGGTG
GTGCTCAGGCGGCTGGGCCCCCCGAGTGGCCCCCTGGCAGCCCTCAGGCCCTCCGGCAGCCTGGCCGGGC
CCGAGTGGCCATGGCAGCACTGGTGTGGCTGCTGGCGGGAGCCAGCATGTCAAGCCTCAACAAGTGGATC
TTCACAGTGCACGGCTTTGGGCGGCCCCTGCTGCTGTCGGCCCTGCACATGCTGGTGGCAGCCCTGGCAT
GCCACCGGGGGGCACGGCGCCCCATGCCAGGCGGCACTCGCTGCCGAGTCCTACTGCTCAGTCTCACCTT
TGGCACGTCCATGGCCTGCGGCAACGTGGGCCTAAGGGCTGTGCCCCTGGACCTGGCACAACTGGTTACT
ACCACCACACCTCTGTTCACCCTGGCCCTGTCGGCGCTGCTGCTGGGCCGCCGCCACCACCCACTTCAGT
TGGCCGCCATGGGTCCGCTCTGCCTGGGGGCCGCCTGCAGCCTGGCTGGAGAGTTCCGGACACCCCCTAC
CGGCTGTGGCTTCCTGCTCGCAGCCACCTGCCTCCGCGGACTCAAGTCGGTTCAGCAAAGCCTCAGCTTC
CAGATCTGCAAAATGGAACTGATGATCCCTATGGAGAGGGTTCGAATGAGGAGCGCTGGGCAGGGCCAGG
AGTGA

Translation (234 aa):
MCRCPPEHHDGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAGASMSSLNKWI
FTVHGFGRPLLLSALHMLVAALACHRGARRPMPGGTRCRVLLLSLTFGTSMACGNVGLRAVPLDLAQLVT
TTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAACSLAGEFRTPPTGCGFLLAATCLRGLKSVQQSLSF
QICKMELMIPMERVRMRSAGQGQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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