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Report for CCDS82720.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
82720.1 |
Public |
Homo sapiens |
22 |
MRTFA |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:57591](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:82720.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:57591](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 22 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 82720.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000652095.2 |
ENSP00000498671.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000652095.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000498671.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000652095](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000498671](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001318139.2 |
NP_001305068.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001318139.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001305068.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001318139](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001305068](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001305068.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 82720.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2901 nt): ATGACTCTACTGGAACCTGAGATGTTAATGATGGCAGTACAGTCAGTGCTACAGTTGAAACTCCAGCAGC GCCGGACCCGGGAAGAACTGGTGAGCCAAGGGATCATGCCGCCTTTGAAAAGTCCAGCCGCATTTCATGA GCAGAGAAGGAGCTTGGAGCGGGCCAGGACAGAGGACTATCTCAAACGGAAGATTCGTTCCCGGCCGGAG AGATCGGAGCTGGTCAGGATGCACATTTTGGAAGAGACCTCGGCTGAGCCATCCCTCCAGGCCAAGCAGC TGAAGCTGAAGAGAGCCAGACTAGCCGATGACCTCAATGAGAAGATTGCACAGAGGCCTGGCCCCATGGA GCTGGTGGAGAAGAACATCCTTCCTGTTGAGTCCAGCCTGAAGGAAGCCATCATTGTGGGCCAGGTGAAC TATCCCAAAGTAGCAGACAGCTCTTCCTTCGATGAGGACAGCAGCGATGCCTTATCCCCCGAGCAGCCTG CCAGCCATGAGTCCCAGGGTTCTGTGCCGTCACCCCTGGAGGCCCGAGTCAGCGAACCACTGCTCAGTGC CACCTCTGCATCCCCCACCCAGGTTGTGTCTCAACTTCCGATGGGCCGGGATTCCAGAGAAATGCTTTTC CTGGCAGAGCAGCCTCCTCTGCCTCCCCCACCTCTGCTGCCTCCCAGCCTCACCAATGGAACCACTATCC CCACTGCCAAGTCCACCCCCACACTCATTAAGCAAAGCCAACCCAAGTCTGCCAGTGAGAAGTCACAGCG CAGCAAGAAGGCCAAGGAGCTGAAGCCAAAGGTGAAGAAGCTCAAGTACCACCAGTACATCCCCCCGGAC CAGAAGCAGGACAGGGGGGCACCCCCCATGGACTCATCCTACGCCAAGATCCTGCAGCAGCAGCAGCTCT TCCTCCAGCTGCAGATCCTCAACCAGCAGCAGCAGCAGCACCACAACTACCAGGCCATCCTGCCTGCCCC GCCAAAGTCAGCAGGCGAGGCCCTGGGAAGCAGCGGGACCCCCCCAGTACGCAGCCTCTCCACTACCAAT AGCAGCTCCAGCTCGGGCGCCCCTGGGCCCTGTGGGCTGGCACGTCAGAACAGCACCTCACTGACTGGCA AGCCGGGAGCCCTGCCGGCCAACCTGGACGACATGAAGGTGGCAGAGCTGAAGCAGGAGCTGAAGTTGCG ATCACTGCCTGTCTCGGGCACCAAAACTGAGCTGATTGAGCGCCTTCGAGCCTATCAAGACCAAATCAGC CCTGTGCCAGGAGCCCCCAAGGCCCCTGCCGCCACCTCTATCCTGCACAAGGCTGGCGAGGTGGTGGTAG CCTTCCCAGCGGCCCGGCTGAGCACGGGGCCAGCCCTGGTGGCAGCAGGCCTGGCTCCAGCTGAGGTGGT GGTGGCCACGGTGGCCAGCAGTGGGGTGGTGAAGTTTGGCAGCACGGGCTCCACGCCCCCCGTGTCTCCC ACCCCCTCGGAGCGCTCACTGCTCAGCACGGGCGATGAAAACTCCACCCCCGGGGACACCTTTGGTGAGA TGGTGACATCACCTCTGACGCAGCTGACCCTGCAGGCCTCGCCACTGCAGATCCTCGTGAAGGAGGAGGG CCCCCGGGCCGGGTCCTGTTGCCTGAGCCCTGGGGGGCGGGCGGAGCTAGAGGGGCGCGACAAGGACCAG ATGCTGCAGGAGAAAGACAAGCAGATCGAGGCGCTGACGCGCATGCTCCGGCAGAAGCAGCAGCTGGTGG AGCGGCTCAAGCTGCAGCTGGAGCAGGAGAAGCGAGCCCAGCAGCCCGCCCCCGCCCCCGCCCCCCTCGG CACCCCCGTGAAGCAGGAGAACAGCTTCTCCAGCTGCCAGCTGAGCCAGCAGCCCCTGGGCCCCGCTCAC CCATTCAACCCCAGCCTGGCGGCCCCAGCCACCAACCACATAGACCCTTGTGCTGTGGCCCCGGGGCCCC CGTCCGTGGTGGTGAAGCAGGAAGCCTTGCAGCCTGAGCCCGAGCCGGTCCCCGCCCCCCAGTTGCTTCT GGGGCCTCAGGGCCCCAGCCTCATCAAGGGGGTTGCACCTCCCACCCTCATCACCGACTCCACAGGGACC CACCTTGTCCTCACCGTGACCAATAAGAATGCAGACAGCCCTGGCCTGTCCAGTGGGAGCCCCCAGCAGC CCTCGTCCCAGCCTGGCTCTCCAGCGCCTGCCCCCTCTGCCCAGATGGACCTGGAGCACCCACTGCAGCC CCTCTTTGGGACCCCCACTTCTCTGCTGAAGAAGGAACCACCTGGCTATGAGGAAGCCATGAGCCAGCAG CCCAAACAGCAGGAAAATGGTTCCTCAAGCCAGCAGATGGACGACCTGTTTGACATTCTCATTCAGAGCG GAGAAATTTCAGCAGATTTCAAGGAGCCGCCATCCCTGCCAGGGAAGGAGAAGCCATCCCCGAAGACAGT CTGTGGGTCCCCCCTGGCAGCACAGCCATCACCTTCTGCTGAGCTCCCCCAGGCTGCCCCACCTCCTCCA GGCTCACCCTCCCTCCCTGGACGCCTGGAGGACTTCCTGGAGAGCAGCACGGGGCTGCCCCTGCTGACCA GTGGGCATGACGGGCCAGAGCCCCTTTCCCTCATTGACGACCTCCATAGCCAGATGCTGAGCAGCACTGC CATCCTGGACCACCCCCCGTCACCCATGGACACCTCGGAATTGCACTTTGTTCCTGAGCCCAGCAGCACC ATGGGCCTGGACCTGGCTGATGGCCACCTGGACAGCATGGACTGGCTGGAGCTGTCGTCAGGTGGTCCCG TGCTGAGCCTAGCCCCCCTCAGCACCACAGCCCCCAGCCTCTTCTCCACAGACTTCCTCGATGGCCATGA TTTGCAGCTGCACTGGGATTCCTGCTTGTAG
Translation (966 aa): MTLLEPEMLMMAVQSVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQRRSLERARTEDYLKRKIRSRPE RSELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESSLKEAIIVGQVN YPKVADSSSFDEDSSDALSPEQPASHESQGSVPSPLEARVSEPLLSATSASPTQVVSQLPMGRDSREMLF LAEQPPLPPPPLLPPSLTNGTTIPTAKSTPTLIKQSQPKSASEKSQRSKKAKELKPKVKKLKYHQYIPPD QKQDRGAPPMDSSYAKILQQQQLFLQLQILNQQQQQHHNYQAILPAPPKSAGEALGSSGTPPVRSLSTTN SSSSSGAPGPCGLARQNSTSLTGKPGALPANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQIS PVPGAPKAPAATSILHKAGEVVVAFPAARLSTGPALVAAGLAPAEVVVATVASSGVVKFGSTGSTPPVSP TPSERSLLSTGDENSTPGDTFGEMVTSPLTQLTLQASPLQILVKEEGPRAGSCCLSPGGRAELEGRDKDQ MLQEKDKQIEALTRMLRQKQQLVERLKLQLEQEKRAQQPAPAPAPLGTPVKQENSFSSCQLSQQPLGPAH PFNPSLAAPATNHIDPCAVAPGPPSVVVKQEALQPEPEPVPAPQLLLGPQGPSLIKGVAPPTLITDSTGT HLVLTVTNKNADSPGLSSGSPQQPSSQPGSPAPAPSAQMDLEHPLQPLFGTPTSLLKKEPPGYEEAMSQQ PKQQENGSSSQQMDDLFDILIQSGEISADFKEPPSLPGKEKPSPKTVCGSPLAAQPSPSAELPQAAPPPP GSPSLPGRLEDFLESSTGLPLLTSGHDGPEPLSLIDDLHSQMLSSTAILDHPPSPMDTSELHFVPEPSST MGLDLADGHLDSMDWLELSSGGPVLSLAPLSTTAPSLFSTDFLDGHDLQLHWDSCL
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