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Report for CCDS82792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82792.1 Public Homo sapiens 3 PDE12 24 110 108 CCDS HistoryNCBI Gene:201626Re-query CCDS DB by CCDS ID:82792.1Re-query CCDS DB by GeneID:201626See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82792.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000487257.1 ENSP00000420626.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000487257.1Link to Ensembl Protein Viewer:ENSP00000420626.1Re-query CCDS DB by Nucleotide ID:ENST00000487257Re-query CCDS DB by Protein ID:ENSP00000420626
Original member Current member NCBI NM_001322177.2 NP_001309106.1 Accepted alive Link to Nucleotide Sequence:NM_001322177.2Link to Protein Sequence:NP_001309106.1Re-query CCDS DB by Nucleotide ID:NM_001322177Re-query CCDS DB by Protein ID:NP_001309106Link to BLAST:NP_001309106.1

Chromosomal Locations for CCDS 82792.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 57556380 57557687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57559310 57559420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGTGGAGGCTCCCAGGCGCCCGCGCCGCGCTTCGGGTGATCCGGACGGCGGTGGAGAAGCTGAGCCGGG
CTGAAGCGGGGAGCCAGACAGCGGCGGGAGCGATGGAGCGCGCTGTAGTGCGCTGCGTACCTTCGGAACC
CAAGCTGAGCCTGTCATTCGCTTTGGCTGATGGTAGCCACAAGAACATGCAGCGCGACCAGAGCGAGCCG
CTGGGTCGAGTCCTCAGCCGCATCGCTACCAATGCCCTAAAGGGTCACGCTAAGGCGGCCGCCGCCAAGA
AGAGCAGGAAGAGCCGGCCGAATGCTAGCGGCGGTGCGGCCTGTTCAGGGCCGGGGCCTGAGCCGGCTGT
GTTCTGCGAGCCCGTGGTGAAGCTGTACTACCGGGAAGAGGCAGTGGCTGAGGACGTGCTCAACGTGGAT
GCCTGGCAAGACGGCGCGGTGCTGCAGATCGGCGATGTTAAGTACAAGGTGGAGCGCAACCCGCCCGCCT
TCACCGAACTGCAGTTGCCGCGCTACATCATGGCCGGGTTCCCTGTGTGCCCCAAACTCAGCCTCGAATT
TGGGGATCCCGCCAGCTCCCTTTTCCGCTGGTATAAGGAAGCCAAGCCCGGAGCGGCGGAGCCCGAGGTC
GGTGTCCCCTCGTCATTGTCTCCCTCCTCACCTTCTTCTTCTTGGACTGAGACTGATGTGGAGGAGCGTG
TCTACACCCCGTCCAATGCCGACATCGGGCTAAGGCTCAAGCTTCACTGCACCCCAGGCGATGGGCAGCG
CTTTGGGCACAGCCGGGAGTTGGAAAGTGTGTGTGTGGTAGAGGCTGGGCCTGGCACCTGCACTTTTGAC
CACCGGCATCTCTACACGAAGAAGGTGACTGAGGACGCTCTCATCCGCACTGTCTCTTACAACATCCTGG
CAGACACGTACGCGCAGACTGAGTTCTCGCGAACGGTTCTGTACCCATACTGTGCCCCCTACGCCCTGGA
GCTCGACTACCGCCAGAACCTTATCCAGAAGGAACTCACCGGCTACAACGCCGATGTCATCTGTTTGCAG
GAGGTTGACCGCGCAGTGTTTTCTGACAGCTTGGTACCCGCCCTAGAGGCCTTCGGGCTCGAGGGGGTGT
TTCGAATCAAGCAGCACGAAGGCCTGGCCACTTTCTACCGAAAGTCTAAGTTCAGCCTTCTTAGCCAGCA
TGACATTTCATTCTACGAAGCCCTCGAGTCCGACCCACTTCACAAAGAACTGCTGGAGAAACTAGTTTTG
TACCCATCAGCGCAGGAGAAGGTGCTCCAGAGATCTTCTGTTCTTCAGGTTTCAGTTCTTCAGTCTACAA
AGGACTCTTCTAAAAGGATATGTGTTGCTAATACCCATCTTTACTGGCATCCTAAAGGTAGGTTTTATTT
GGTATCACAAGTGACTTAA

Translation (472 aa):
MWRLPGARAALRVIRTAVEKLSRAEAGSQTAAGAMERAVVRCVPSEPKLSLSFALADGSHKNMQRDQSEP
LGRVLSRIATNALKGHAKAAAAKKSRKSRPNASGGAACSGPGPEPAVFCEPVVKLYYREEAVAEDVLNVD
AWQDGAVLQIGDVKYKVERNPPAFTELQLPRYIMAGFPVCPKLSLEFGDPASSLFRWYKEAKPGAAEPEV
GVPSSLSPSSPSSSWTETDVEERVYTPSNADIGLRLKLHCTPGDGQRFGHSRELESVCVVEAGPGTCTFD
HRHLYTKKVTEDALIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQ
EVDRAVFSDSLVPALEAFGLEGVFRIKQHEGLATFYRKSKFSLLSQHDISFYEALESDPLHKELLEKLVL
YPSAQEKVLQRSSVLQVSVLQSTKDSSKRICVANTHLYWHPKGRFYLVSQVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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