NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS82870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82870.1 Public Homo sapiens 3 NMD3 24 110 108 CCDS HistoryNCBI Gene:51068Re-query CCDS DB by CCDS ID:82870.1Re-query CCDS DB by GeneID:51068See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82870.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000472947.5 ENSP00000417559.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000472947.5Link to Ensembl Protein Viewer:ENSP00000417559.1Re-query CCDS DB by Nucleotide ID:ENST00000472947Re-query CCDS DB by Protein ID:ENSP00000417559
Original member Current member NCBI NM_001320227.2 NP_001307156.1 Accepted alive Link to Nucleotide Sequence:NM_001320227.2Link to Protein Sequence:NP_001307156.1Re-query CCDS DB by Nucleotide ID:NM_001320227Re-query CCDS DB by Protein ID:NP_001307156Link to BLAST:NP_001307156.1

Chromosomal Locations for CCDS 82870.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 161222014 161222057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161224930 161225064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161227247 161227343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161233399 161233479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161234727 161234855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161235122 161235212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161238113 161238191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161238730 161238826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161241046 161241163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161242508 161242653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161246336 161246448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161247258 161247330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161249454 161249560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161250256 161250326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161250780 161250890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161252769 161252866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGGAGTATATGGCAGAATCCACCGACCGCAGCCCTGGACACATCTTGTGCTGTGAGTGTGGTGTTCCGA
TA
AGTCCAAATCCTGCCAATATTTGTGTGGCCTGTTTGCGAAGTAAAGTGGACATCAGCCAAGGTATTCC
G
AAACAAGTCTCGATTTCGTTCTGCAAACAATGTCAAAGGTATTTTCAACCACCAGGAACTTGGATACAG
TGT
GCTTTAGAATCCAGGGAACTTCTTGCTTTGTGCTTGAAAAAAATCAAAGCCCCTCTGAGTAAGGTAC
GG
CTTGTAGATGCAGGCTTTGTTTGGACTGAGCCTCATTCTAAGAGACTTAAAGTTAAACTGACTATTCA
G
AAAGAGGTGATGAATGGTGCTATCCTTCAACAAGTGTTTGTGGTGGATTATGTTGTTCAGTCCCAAATG
TGT
GGAGATTGCCATAGAGTAGAAGCTAAGGATTTCTGGAAGGCTGTGATTCAAGTGAGGCAAAAGACTT
TG
CATAAAAAAACTTTCTACTATCTGGAACAGTTAATTCTGAAATATGGAATGCATCAGAATACACTTCG
T
ATCAAAGAGATTCATGATGGTCTGGATTTTTATTATTCCTCAAAACAACATGCTCAGAAGATGGTCGAA
TTT
CTTCAGTGTACAGTTCCCTGTAGATACAAAGCATCACAAAGACTGATCTCTCAAGATATCCATAGTA
AC
ACATACAATTACAAAAGCACTTTTTCTGTGGAAATTGTTCCAATATGCAAGGATAATGTTGTCTGTCT
G
TCTCCAAAACTGGCACAAAGCCTGGGAAATATGAACCAGATTTGTGTGTGTATTCGAGTAACCAGTGCC
ATT
CACCTCATTGATCCAAACACCCTACAAGTGGCAGATATTGATGGGAGCACTTTCTGGAGTCACCCTT
TC
AATAGTTTATGTCATCCCAAACAGCTAGAGGAGTTTATTGTGATGGAATGCAGCATAGTCCAAGATAT
A
AAACGTGCTGCAGGTGCTGGAATGATATCAAAAAAGCATACCCTCGGGGAAGTCTGGGTACAGAAGACA
TCT
GAAATGAATACAGATAAACAGTATTTTTGTCGTACTCATTTGGGACATCTTCTAAATCCCGGAGACC
TG
GTGTTAGGGTTTGATTTGGCCAACTGTAACTTAAATGATGAGCATGTCAACAAAATGAACTCAGATAG
A
GTTCCAGATGTGGTATTAATCAAGAAGAGCTATGACCGGACCAAACGTCAGCGTCGTAGAAACTGGAAA
TTG
AAAGAGCTTGCAAGAGAGAGAGAAAACATGGATACAGATGATGAAAGGCAATACCAAGATTTTCTTG
AA
GATCTTGAAGAAGATGAGGCAATTCGAAAAAATGTCAACATTTACAGAGATTCAGCCATCCCTGTGGA
A
AGTGACACCGATGATGAAGGAGCACCTCGAATTAGTCTGGCTGAGATGCTTGAAGACCTTCATATTTCC
CAA
GATGCCACTGGTGAAGAAGCCAAATCTGCACCTGAAGCTGCTGATTTAGAGTCAGAAGTCACTGAGG
GG
CCAAGTGTGGTGGTTGACGCCTGTAATCCCAGCACTTTGGGAGGCTGA


Translation (529 aa):
MEYMAESTDRSPGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQ
C
ALESRELLALCLKKIKAPLSK
VRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQM
C
GDCHRVEAKDFWKAVIQVRQK
TLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVE
F
LQCTVPC
RYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSA
I
HLIDPNTLQ
VADIDGSTFWSHPFNSLCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKT
S
EMNTDKQYFCRTHLGHLLNPGDLVL
GFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRNWK
L
KELARERENMDTDDE
RQYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEMLEDLHIS
Q
DATGEE
AKSAPEAADLESEVTEGPSVVVDACNPSTLGG



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser