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Report for CCDS8289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8289.1 Public Homo sapiens 11 CHORDC1 24 110 108 CCDS HistoryNCBI Gene:26973Re-query CCDS DB by CCDS ID:8289.1Re-query CCDS DB by GeneID:26973See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8289.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320585.11 ENSP00000319255.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320585.11Link to Ensembl Protein Viewer:ENSP00000319255.6Re-query CCDS DB by Nucleotide ID:ENST00000320585Re-query CCDS DB by Protein ID:ENSP00000319255
Original member Current member NCBI NM_012124.3 NP_036256.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012124.3Link to Protein Sequence:NP_036256.2Re-query CCDS DB by Nucleotide ID:NM_012124Re-query CCDS DB by Protein ID:NP_036256Link to BLAST:NP_036256.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036256.2 332 Q9UHD1-1 332 100% 0 0

Chromosomal Locations for CCDS 8289.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 90202405 90202551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90202813 90202875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90203308 90203427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90205460 90205565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90206202 90206272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90210536 90210594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90211215 90211318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90214018 90214175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90215174 90215230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90218135 90218184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90222891 90222954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGCCTTGCTGTGCTACAACCGGGGCTGCGGTCAGCGCTTCGATCCTGAGACCAATTCCGACGATGCTT
GCACATACCACCCAGGTGTTCCGGTCTTTCACGATGCATTAAAGGGTTGGTCTTGCTGTAAGAGAAGAAC
AACTGATTTTTCTGATTTCTTAAGCATTGTAGGCTGTACAAAAGGTAGACATAATAGTGAGAAGCCACCT
GAGCCAGTCAAACCTGAAGTCAAGACTACTGAGAAGAAGGAGCTATGTGAATTAAAACCCAAATTTCAGG
AACACATCATTCAAGCCCCTAAGCCAGTAGAAGCAATAAAAAGACCAAGCCCAGATGAACCAATGACAAA
TTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTAAACTGTCATCAGGGAATGAA
GAAAATAAGAAAGAAGAAGACAATGATGAAATTAAGATTGGGACCTCATGTAAGAATGGAGGGTGTTCAA
AGACATACCAGGGTCTAGAGAGTCTAGAAGAAGTCTGTGTATATCATTCTGGAGTACCTATTTTCCATGA
GGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAAGAGGGC
TGTACAAAAGGGAAACACATGTGGACTAAAAAAGATGCTGGGAAAAAAGTTGTTCCATGTAGACATGACT
GGCATCAGACTGGAGGTGAAGTTACCATTTCAGTATATGCTAAAAACTCACTTCCAGAACTTAGCCGAGT
AGAAGCAAATAGCACATTGTTAAATGTGCATATTGTATTTGAAGGAGAGAAGGAATTTGATCAAAATGTG
AAATTATGGGGTGTGATTGATGTAAAGCGAAGTTATGTAACTATGACTGCAACAAAGATTGAAATCACTA
TGAGAAAAGCTGAACCGATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCTAAAAAGCAGGAAAAACAAAA
AGATGCCACAACAGATTGA

Translation (332 aa):
MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKPP
EPVKPEVKTTEKKELCELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQALDKLKLSSGNE
ENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEG
CTKGKHMWTKKDAGKKVVPCRHDWHQTGGEVTISVYAKNSLPELSRVEANSTLLNVHIVFEGEKEFDQNV
KLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPAAKKQEKQKDATTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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