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Report for CCDS8308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8308.1 Public Homo sapiens 11 JRKL 24 110 108 CCDS HistoryNCBI Gene:8690Re-query CCDS DB by CCDS ID:8308.1Re-query CCDS DB by GeneID:8690See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332349.5 ENSP00000333350.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332349.5Link to Ensembl Protein Viewer:ENSP00000333350.4Re-query CCDS DB by Nucleotide ID:ENST00000332349Re-query CCDS DB by Protein ID:ENSP00000333350
Original member Current member NCBI NM_001261833.2 NP_001248762.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001261833.2Link to Protein Sequence:NP_001248762.1Re-query CCDS DB by Nucleotide ID:NM_001261833Re-query CCDS DB by Protein ID:NP_001248762Link to BLAST:NP_001248762.1
Original member Current member NCBI NM_003772.4 NP_003763.2 Accepted alive Link to Nucleotide Sequence:NM_003772.4Link to Protein Sequence:NP_003763.2Re-query CCDS DB by Nucleotide ID:NM_003772Re-query CCDS DB by Protein ID:NP_003763Link to BLAST:NP_003763.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001248762.1 524 Q9Y4A0 524 100% 0 0
NP_003763.2 524 Q9Y4A0 524 100% 0 0

Chromosomal Locations for CCDS 8308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96390650 96392224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGTCAGGGAAACGGAAGCGTGTGGTGTTGACTATTAAAGATAAGCTTGATATAATAAAGAAACTTGAAG
AC
GGAGGTTCTTCCAAACAACTGGCAGTGATTTATGGAATTGGTGAAACAACAGTTCGGGATATAAGAAA
A
AATAAGGAAAAGATTATAACTTATGCAAGCAGTTCTGATTCCACAAGTCTTTTGGCCAAGAGGAAATCT
ATG
AAGCCATCCATGTATGAGGAATTGGACAGGGCAATGCTGGAATGGTTCAACCAGCAAAGAGCAAAAG
GG
AATCCCATATCTGGACCAATTTGTGCAAAAAGGGCAGAGTTCTTCTTTTATGCTTTGGGAATGGATGG
T
GATTTTAACCCCTCTGCCGGTTGGCTAACTCGTTTTAAGCAGCGGCACAGCATTAGAGAGATTAACATT
AGA
AATGAAAGATTAAATGGAGATGAGACTGCGGTGGAAGATTTTTGTAATAACTTTCGAGATTTTATTG
AA
CGAGAGAATTTACAGCCTGAACAAATCTACAATGCAGATGAAACTGGACTCTTTTGGAAGTGCTTGCC
T
TCTAGGATTTCAGTAATCAAAGGTAAATGCACTGTCCCTGGGCACAAATCAATTGAAGAAAGAGTCACA
ATC
ATGTGTTGTGCCAATGCAACAGGTTTACACAAACTTAAACTTTGTGTTGTGGGGAAAGCAAAGAAAC
CT
CGCTCCTTTAAATCAACTGACACCTTAAACCTGCCAGTCTCTTATTTCAGCCAAAAAGGTGCATGGAT
G
GATCTTTCCATTTTCCGACAATGGTTTGATAAAATTTTTGTGCCGCAAGTTCGAGAGTATTTAAGATCT
AAA
GGCTTGCAGGAAAAGGCTGTGCTCTTGTTGGATAATTCACCAACACATCCAAATGAAAATGTCCTAA
GG
TCAGATGATGGCCAAATATTTGCTAAATATTTACCACCTAATGTGGCCTCATTGATTCAGCCTTCAGA
T
CAGGGAGTCATAGCAACGATGAAGAGAAATTATCGTGCAGGTCTTCTCCAGAACAACTTGGAAGAAGGT
AAT
GACCTGAAATCATTCTGGAAGAAGCTAACTCTGTTGGATGCACTTTATGAAATAGCAATGGCATGGA
AC
TTAGTAAAACCAGTTACCATTAGCAGAGCATGGAAGAAGATTCTCCCTATGGTAGAGGAGAAAGAGAG
C
CTGGACTTTGATGTTGAAGATATTTCTGTGGCTACTGTGGCTGCCATTTTACAACACACCAAAGGATTG
GAA
AATGTGACTACTGAGAACCTTGAAAAATGGCTTGAAGTAGACAGTACTGAACCAGGCTATGAAGTGT
TA
ACTGATAGCGAAATCATCAGAAGAGCACAAGGCCAGGCAGATGAATCCAGTGAAAATGAGGAGGAGGA
A
ATAGAACTAATTCCAGAGAAACATATTAATCATGCAGCTGCCCTCCAGTGGACTGAAAATTTATTGGAT
TAT
CTAGAACAACAAGGTGATATGATTCTACCTGATAGACTGGTAATACGTAAACTTCGAGCCACCATCA
GA
AATAAACAGAAGATGACAAAGTCAAGTCAATAA


Translation (524 aa):
MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDSTSLLAKRKS
M
KPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAEFFFYALGMDGDFNPSAGWLTRFKQRHSIREINI
R
NERLNGDETAVEDFCNNFRDFIERENLQPEQIYNADETGLFWKCLPSRISVIKGKCTVPGHKSIEERVT
I
MCCANATGLHKLKLCVVGKAKKPRSFKSTDTLNLPVSYFSQKGAWMDLSIFRQWFDKIFVPQVREYLRS
K
GLQEKAVLLLDNSPTHPNENVLRSDDGQIFAKYLPPNVASLIQPSDQGVIATMKRNYRAGLLQNNLEEG
N
DLKSFWKKLTLLDALYEIAMAWNLVKPVTISRAWKKILPMVEEKESLDFDVEDISVATVAAILQHTKGL
E
NVTTENLEKWLEVDSTEPGYEVLTDSEIIRRAQGQADESSENEEEEIELIPEKHINHAAALQWTENLLD
Y
LEQQGDMILPDRLVIRKLRATIRNKQKMTKSSQ




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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