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Report for CCDS83300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83300.1 Public Homo sapiens 8 TRAM1 24 110 108 CCDS HistoryNCBI Gene:23471Re-query CCDS DB by CCDS ID:83300.1Re-query CCDS DB by GeneID:23471See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000521425.5 ENSP00000428052.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521425.5Link to Ensembl Protein Viewer:ENSP00000428052.1Re-query CCDS DB by Nucleotide ID:ENST00000521425Re-query CCDS DB by Protein ID:ENSP00000428052
Original member Current member NCBI NM_001317805.2 NP_001304734.1 Accepted alive Link to Nucleotide Sequence:NM_001317805.2Link to Protein Sequence:NP_001304734.1Re-query CCDS DB by Nucleotide ID:NM_001317805Re-query CCDS DB by Protein ID:NP_001304734Link to BLAST:NP_001304734.1

Chromosomal Locations for CCDS 83300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70574932 70575005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70583164 70583324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70583650 70583793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70586895 70586999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70587106 70587176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70594506 70594590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70596263 70596321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70597895 70598011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70598134 70598184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGCTAGTGGCGATAATTATTCATGCCGTAATTCAAGAGTATATGTTGGATAAAATTAACAGGCGAATGC
ACTTCTCCAAAACAAAACACAGCAAGTTTAATGAATCTGGTCAGCTTAGTGCGTTCTACCTTTTTGCCTG
TGTTTGGGGCACATTCATTCTCATCTCTGAAAACTACATCTCAGACCCAACTATCTTATGGAGGGCTTAT
CCCCATAACCTGATGACATTTCAAATGAAGTTTTTCTACATATCACAGCTGGCTTACTGGCTTCATGCTT
TTCCTGAACTCTACTTCCAGAAAACCAAAAAAGAAGATATTCCTCGTCAGCTTGTCTACATTGGTCTTTA
CCTCTTCCACATTGCTGGAGCTTACCTTTTGAACTTGAATCATCTAGGACTTGTTCTTCTGGTGCTACAT
TATTTTGTTGAATTTCTTTTCCACATTTCCCGCCTGTTTTATTTTAGCAATGAAAAGTATCAGAAAGGAT
TTTCTCTGTGGGCAGTTCTTTTTGTTTTGGGAAGACTTCTGACTTTAATTCTTTCAGTACTGACTGTTGG
TTTTGGCCTTGCAAGAGCAGAAAATCAGAAGCTGGATTTCAGTACTGGAAACTTCAATGTGTTAGCTGTT
AGAATCGCTGTTCTGGCATCCATTTGCGTTACTCAGGCATTTATGATGTGGAAGTTCATTAATTTTCAGC
TTCGAAGGTGGAGGGAACATTCTGCTTTTCAGGCACCAGCTGTGAAGAAGAAACCAACAGTAACTAAAGG
CAGATCTTCTAAAAAAGGAACAGAAAATGGTGTGAATGGAACATTAACTTCAAATGTAGCAGACTCTCCC
CGGAATAAAAAAGAGAAATCTTCATAA

Translation (288 aa):
MLVAIIIHAVIQEYMLDKINRRMHFSKTKHSKFNESGQLSAFYLFACVWGTFILISENYISDPTILWRAY
PHNLMTFQMKFFYISQLAYWLHAFPELYFQKTKKEDIPRQLVYIGLYLFHIAGAYLLNLNHLGLVLLVLH
YFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLTVGFGLARAENQKLDFSTGNFNVLAV
RIAVLASICVTQAFMMWKFINFQLRRWREHSAFQAPAVKKKPTVTKGRSSKKGTENGVNGTLTSNVADSP
RNKKEKSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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