NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS83467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83467.1 Public Homo sapiens X CXorf38 24 110 108 CCDS HistoryNCBI Gene:159013Re-query CCDS DB by CCDS ID:83467.1Re-query CCDS DB by GeneID:159013See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83467.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378421.1 ENSP00000367677.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378421.1Link to Ensembl Protein Viewer:ENSP00000367677.1Re-query CCDS DB by Nucleotide ID:ENST00000378421Re-query CCDS DB by Protein ID:ENSP00000367677
Original member Current member EBI ENST00000378426.5 ENSP00000367683.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378426.5Link to Ensembl Protein Viewer:ENSP00000367683.1Re-query CCDS DB by Nucleotide ID:ENST00000378426Re-query CCDS DB by Protein ID:ENSP00000367683
Original member Current member NCBI NM_001330455.2 NP_001317384.1 Accepted alive Link to Nucleotide Sequence:NM_001330455.2Link to Protein Sequence:NP_001317384.1Re-query CCDS DB by Nucleotide ID:NM_001330455Re-query CCDS DB by Protein ID:NP_001317384Link to BLAST:NP_001317384.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317384.1 200 Q8TB03-2 200 100% 0 0

Chromosomal Locations for CCDS 83467.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 40630615 40630773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 40636533 40636712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 40637007 40637156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 40639009 40639122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGCCCCGAGGACTAGCAGACAAACAAGGACCTGAGGAATGTGATGCAGTTGCTCTTTTAAGTCTCATCA
ACTCCTGCGATCACTTCGTGGTTGATCGAAAGAAAGTCACAGAGGTAATTAAATGTCGTAATGAGATCAT
GCACTCTTCAGAGATGAAAGTATCTTCTACGTGGCTTCGAGATTTTCAGATGAAGATCCAAAATTTTCTG
AATGAATTCAAGAACATCCCAGAGATTGTGGCAGTATACTCCAGAATAGAACAGCTGTTGACGTCTGACT
GGGCTGTTCACATCCCCGAGGAAGATCAGCGAGATGGGTGTGAATGTGAAATGGGAACTTACCTGAGTGA
GAGCCAAGTCAATGAAATAGAAATGCAGTTACTAAAGGAGAAACTTCAAGAGATATATCTTCAAGCAGAA
GAACAAGAGGTGTTGCCTGAAGAGCTCTCAAATCGACTGGAAGTGGTGAAGGAATTTCTGAGAAACAATG
AGGATCTTAGAAATGGCCTTACAGAAGATATGCAGAAGCTAGACAGCCTCTGTCTACATCAAAAACTGGA
TTCACAGGAACCTGGGAGACAAACACCTGACAGGAAGGCCTGA

Translation (200 aa):
MPRGLADKQGPEECDAVALLSLINSCDHFVVDRKKVTEVIKCRNEIMHSSEMKVSSTWLRDFQMKIQNFL
NEFKNIPEIVAVYSRIEQLLTSDWAVHIPEEDQRDGCECEMGTYLSESQVNEIEMQLLKEKLQEIYLQAE
EQEVLPEELSNRLEVVKEFLRNNEDLRNGLTEDMQKLDSLCLHQKLDSQEPGRQTPDRKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH