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Report for CCDS83667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83667.1 Public Mus musculus 1 Rcor3 23 108 98 CCDS HistoryNCBI Gene:214742Re-query CCDS DB by CCDS ID:83667.1Re-query CCDS DB by GeneID:214742See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83667.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192866.5 ENSMUSP00000142054.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192866.5Link to Ensembl Protein Viewer:ENSMUSP00000142054.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192866Re-query CCDS DB by Protein ID:ENSMUSP00000142054
Original member NCBI NM_001346740.1 NP_001333669.1 Updated not alive Link to Nucleotide Sequence:NM_001346740.1Link to Protein Sequence:NP_001333669.1Re-query CCDS DB by Nucleotide ID:NM_001346740Re-query CCDS DB by Protein ID:NP_001333669
Current member NCBI NM_001346740.2 NP_001333669.1 Accepted alive Link to Nucleotide Sequence:NM_001346740.2Link to Protein Sequence:NP_001333669.1Re-query CCDS DB by Nucleotide ID:NM_001346740Re-query CCDS DB by Protein ID:NP_001333669Link to BLAST:NP_001333669.1

Chromosomal Locations for CCDS 83667.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 192100811 192101155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192101626 192101867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192108644 192108701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192116269 192116346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192119915 192120133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192123539 192123617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192124243 192124367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192125866 192126027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192127976 192128028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192130383 192130460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192137433 192137489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192137739 192137898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGCCCGGCATGATGGAGAAAGGGCCCGAGTTACTGGGGAAGAGCCGATCGGCCAACGGCGGCGCCAAGA
GCCCGGCGGGAGGCGGCGGCTCCTCGGCCAACGGCGGGCTGCACTTCTCGGAGCCCGAGAGCGGCTGCAG
CAGCGACGACGAGCACGGGGATGTTGGGATGAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAATTC
GATCCAGGTGCTACCAAGTACACAGATAAAGACAATGGAGGCATGCTTGTGTGGTCTCCTTATCACAGTA
TCCCAGATGCCAAATTGGATGAATATATCGCCATTGCAAAAGAGAAACATGGCTACAATGTTGAACAGGC
GCTTGGCATGTTGTTCTGGCATAAACACAACATTGAGAAGTCCCTTGCGGACCTCCCTAACTTCACGCCC
TTTCCGGATGAGTGGACAGTGGAAGACAAAGTCCTGTTTGAACAAGCCTTTAGTTTTCATGGGAAGAGCT
TTCACAGGATTCAGCAAATGCTTCCAGATAAGACAATTGCAAGTCTTGTAAAGTATTACTATTCTTGGAA
AAAAACTCGCTCAAGGACAAGTTTGATGGATCGCCAGGCTCGTAAACTAGCCAATAGACACAATCAGGGT
GACAGTGATGATGACGTAGAAGAAGCTCACCCCATGGATGGAAACGACAGTGACTACGACCCAAAGAAAG
AAGCCAAAAGAGAGGGTAACGCTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGGGCCGGAGAGAGTA
CCAGAGTCTGCAGCACCGCCACCACTCTCAGCGCTCCAAGTGCCGCCCTCCTAAGGGCATGTATCTAACC
CAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGG
AGCTGATCTCTCTCAAGCGCCAGGTTCAGAATGCTAAGCAAGTAAACAGTGCACTTAAGCAGAAAATGGA
AGGTGGAATTGAAGAGTTCAAACCGCCTGAGTCAAATCAGAAAATTAATGCCCGTTGGACCACAGAGGAG
CAGCTTCTAGCAGTGCAAGGTGTCCGCAAATATGGTAAAGATTTTCAAGCTATTGCAGATGTAATTGGCA
ACAAGACTGTTGGCCAAGTGAAGAACTTCTTTGTAAACTACAGGCGTCGGTTTAACTTAGAGGAGGTATT
GCAGGAGTGGGAAGCAGAACAAGGAACCCAGGCTTCTAATGCTGATGCTTCTGCTTTAGGGGAGGAGACA
CAAAGTGCTTCTAAGGTGCCGTCAGGGAAGAGCACTGACGAAGAAGCGGAGGCACAGACCCCACAGGCTC
CTCGGACTCTGGGTCCATCACCTCCTGCCCCATCATCCACTCCAACACCAACAGTCCCCATTGCCACTCT
GAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCCCTGCTCTTCACCGACAACCTCCTCCA
CTCCAGCAGCAGGCTCGGTTCATCCAGCCCCGGCCAACTCTCAATCAGCCTCCTCCACCTCTCATTCGCC
CTGCTAACTCCATGCCACCCCGCCTAAACCCAAGACCAGTGTTGACCACGGTTGGCGGTCAGCAGCCACC
TTCACTCATTGGGATTCAGACAGATTCACAGCCTTCACTGCACTAA

Translation (551 aa):
MPGMMEKGPELLGKSRSANGGAKSPAGGGGSSANGGLHFSEPESGCSSDDEHGDVGMRVGAEYQARIPEF
DPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTP
FPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQG
DSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLT
QEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEE
QLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNADASALGEET
QSASKVPSGKSTDEEAEAQTPQAPRTLGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHRQPPP
LQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIGIQTDSQPSLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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