NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS83672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83672.1 Public Mus musculus 10 Oprm1 23 108 98 CCDS HistoryNCBI Gene:18390Re-query CCDS DB by CCDS ID:83672.1Re-query CCDS DB by GeneID:18390See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000154906.7 ENSMUSP00000114342.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154906.7Link to Ensembl Protein Viewer:ENSMUSP00000114342.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154906Re-query CCDS DB by Protein ID:ENSMUSP00000114342
Original member Current member NCBI NM_001304948.1 NP_001291877.1 Accepted alive Link to Nucleotide Sequence:NM_001304948.1Link to Protein Sequence:NP_001291877.1Re-query CCDS DB by Nucleotide ID:NM_001304948Re-query CCDS DB by Protein ID:NP_001291877Link to BLAST:NP_001291877.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291877.1 409 P42866-4 409 100% 0 0

Chromosomal Locations for CCDS 83672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 6788875 6789158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6828885 6829237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6829977 6830497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6840566 6840637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGGACAGCAGCGCCGGCCCAGGGAACATCAGCGACTGCTCTGACCCCTTAGCTCCTGCAAGTTGCTCCC
CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCG
CACGGGGCTTGGCGGGAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTCCATGGTCACAGCCATCACC
ATCATGGCCCTCTATTCTATCGTGTGTGTAGTGGGCCTCTTTGGAAACTTCCTGGTCATGTATGTGATTG
TAAGATATACCAAAATGAAGACTGCCACCAACATCTACATTTTCAACCTTGCTCTGGCAGATGCCTTAGC
CACTAGCACGCTGCCCTTTCAGAGTGTTAACTACCTGATGGGAACGTGGCCCTTTGGAAACATCCTCTGC
AAGATCGTGATCTCAATAGACTACTACAACATGTTCACCAGTATCTTCACCCTCTGCACCATGAGTGTAG
ACCGCTACATTGCCGTCTGCCACCCGGTCAAGGCCCTGGATTTCCGTACCCCCCGAAATGCCAAAATTGT
CAATGTCTGCAACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAATGTTCATGGCAACCACAAAATAC
AGGCAGGGGTCCATAGATTGCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAACCTGCTCAAAA
TCTGTGTCTTCATCTTCGCCTTCATCATGCCGGTCCTCATCATCACTGTGTGTTATGGACTGATGATCTT
ACGACTCAAGAGTGTCCGCATGCTGTCGGGCTCCAAAGAAAAGGACAGGAACCTGCGCAGGATCACCCGG
ATGGTGCTGGTGGTCGTGGCTGTATTTATTGTCTGCTGGACCCCCATCCACATCTATGTCATCATCAAAG
CACTGATCACGATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCACTTCTGCATTGCCTTGGGTTACAC
AAACAGCTGCCTGAACCCAGTTCTTTATGCGTTCCTGGATGAAAACTTCAAACGATGTTTTAGAGAGTTC
TGCATCCCAACTTCCTCCACAATCGAACAGCAAAACTCTGCTCGAATCCGTCAAAACACTAGGGAACACC
CCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGAAGCTTTTAATGTGGAGAGCTATGCCTACATT
CAAGAGACACTTGGCTATCATGTTAAGCCTTGATAATTAG

Translation (409 aa):
MDSSAGPGNISDCSDPLAPASCSPAPGSWLNLSHVDGNQSDPCGPNRTGLGGSHSLCPQTGSPSMVTAIT
IMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILC
KIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKY
RQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRRITR
MVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREF
CIPTSSTIEQQNSARIRQNTREHPSTANTVDRTNHQKLLMWRAMPTFKRHLAIMLSLDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH