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Report for CCDS83682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83682.1 Public Mus musculus 10 Aig1 23 108 98 CCDS HistoryNCBI Gene:66253Re-query CCDS DB by CCDS ID:83682.1Re-query CCDS DB by GeneID:66253See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83682.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162610.7 ENSMUSP00000125366.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162610.7Link to Ensembl Protein Viewer:ENSMUSP00000125366.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162610Re-query CCDS DB by Protein ID:ENSMUSP00000125366
Original member NCBI NM_001347362.1 NP_001334291.1 Updated not alive Link to Nucleotide Sequence:NM_001347362.1Link to Protein Sequence:NP_001334291.1Re-query CCDS DB by Nucleotide ID:NM_001347362Re-query CCDS DB by Protein ID:NP_001334291
Current member NCBI NM_001347362.2 NP_001334291.1 Accepted alive Link to Nucleotide Sequence:NM_001347362.2Link to Protein Sequence:NP_001334291.1Re-query CCDS DB by Nucleotide ID:NM_001347362Re-query CCDS DB by Protein ID:NP_001334291Link to BLAST:NP_001334291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334291.1 238 Q9D8B1-2 238 100% 0 0

Chromosomal Locations for CCDS 83682.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 13647669 13647706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13653586 13653749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13690524 13690639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13801848 13801949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13829243 13829398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13868618 13868758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCGCTTGTCCCCTGCCAGGTGCTGCGGGTAGCAATCCTGCTATCCTATTGCTCCATCCTGTGCAACT
ACAAGGCCATCGAAATGCCCTCGCATCAGACCTACGGAGGCAGCTGGAAGTTCCTGACCTTCATTGATCT
GGTTATCCAGGCCGTGTTCTTCGGCATCTGTGTGCTGACTGACCTCTCTAGTCTTCTGACCAGAGGCAGC
GGGAACCAGGAGCAAGAACGACAGCTCAGGAAGCTCATCTCTCTCCGGGACTGGACGCTGGCCGTGCTGG
CCTTCCCTGTCGGGGTTTTTGTTGTTGCGGTGTTCTGGACCATCTATGCCTATGACAGAGAGATGATATA
CCCAAGATTGCTTGACAACTTTATCCCAGGGTGGCTGAACCATGGAATGCACACAACGGTTTTGCCCTTT
ATATTGATCGAGATGAGAACATCCCACCATCAGTATCCCAGCAGGAGCAGTGGACTCGCCGCCATATGCA
CCTTCTCCGTGGGCTATATATTATGGGTGTGCTGGATACATCATGTCACCGGCATGTGGGTGTACCCTTT
CCTGGAACATATTGGCTCAGGAGCCAGGATCATCTTCTTTGGGTCAACAACCATCCTAATGAATTTCCTG
TACCTGCTTGGAGAAGTACTAAACAGCTATATCTGGGATACACAGAGAAGTATAGAAGAAGAAAAAGAGA
AGCCTAAGCTGGAATGA

Translation (238 aa):
MALVPCQVLRVAILLSYCSILCNYKAIEMPSHQTYGGSWKFLTFIDLVIQAVFFGICVLTDLSSLLTRGS
GNQEQERQLRKLISLRDWTLAVLAFPVGVFVVAVFWTIYAYDREMIYPRLLDNFIPGWLNHGMHTTVLPF
ILIEMRTSHHQYPSRSSGLAAICTFSVGYILWVCWIHHVTGMWVYPFLEHIGSGARIIFFGSTTILMNFL
YLLGEVLNSYIWDTQRSIEEEKEKPKLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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