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Report for CCDS8399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8399.1 Public Homo sapiens 11 IFT46 24 110 108 CCDS HistoryNCBI Gene:56912Re-query CCDS DB by CCDS ID:8399.1Re-query CCDS DB by GeneID:56912See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8399.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264020.6 ENSP00000264020.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000264020.6Link to Ensembl Protein Viewer:ENSP00000264020.2Re-query CCDS DB by Nucleotide ID:ENST00000264020Re-query CCDS DB by Protein ID:ENSP00000264020
Original member Current member NCBI NM_020153.4 NP_064538.3 Accepted alive Link to Nucleotide Sequence:NM_020153.4Link to Protein Sequence:NP_064538.3Re-query CCDS DB by Nucleotide ID:NM_020153Re-query CCDS DB by Protein ID:NP_064538Link to BLAST:NP_064538.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064538.3 355 Q9NQC8-2 355 100% 0 0

Chromosomal Locations for CCDS 8399.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118544916 118545011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118545409 118545494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118545793 118545853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118551786 118551852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118552214 118552335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118554459 118554587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118554990 118555083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118555248 118555322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118556906 118557045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118557738 118557890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118559785 118559829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGCTGATAACAGCAGTGATGAGTGTGAAGAGGAAAATAACAAGGTCCTAAGGGAGGGCATGCCACAGG
CTCCAGGCCACAGAGGCAAAGACATGGACCCTGTTCCACCTGCCCCTGCAAGTCTCAAGTGCCACCAGAC
CCCTTCTCATGTACTTGAGAGGGTGGGATGGTACAGAGAGAGCCAGAAGCACAGAAAGGAGAAGAAGAAG
ACCTCACAGTTGACACCTCAACGGGGCTTTAGTGAAAATGAGGATGACGATGATGATGATGATGATTCAT
CTGAAACTGATTCTGATTCTGATGATGATGATGAAGAGCATGGAGCCCCTCTGGAAGGGGCCTATGACCC
TGCAGACTATGAGCATTTGCCAGTTTCTGCTGAAATTAAGGAACTCTTCCAGTACATCAGTAGGTACACA
CCTCAGTTGATTGACCTGGACCACAAACTGAAGCCTTTCATTCCTGATTTTATCCCAGCTGTCGGGGATA
TTGATGCATTCTTAAAGGTCCCACGTCCTGATGGAAAGCCTGACAACCTTGGCCTATTGGTATTGGATGA
ACCTTCTACAAAGCAGTCAGACCCTACGGTGCTCTCACTCTGGTTAACAGAGAATTCTAAGCAGCACAAC
ATCACACAACATATGAAAGTAAAAAGCCTAGAAGATGCAGAAAAGAATCCCAAAGCCATTGACACGTGGA
TTGAGAGCATCTCTGAATTACACCGTTCTAAGCCCCCTGCGACTGTGCACTACACCAGGCCCATGCCCGA
CATTGACACGCTGATGCAGGAATGGTCCCCGGAGTTTGAAGAGCTTTTGGGCAAGGTAAGCCTGCCCACG
GCAGAGATTGATTGCAGCCTGGCAGAGTACATTGACATGATCTGTGCCATTCTAGACATCCCTGTCTACA
AGAGTCGGATCCAGTCCCTCCATCTGCTCTTTTCCCTCTACTCAGAATTCAAGAACTCACAGCATTTTAA
AGCTCTCGCTGAAGGCAAGAAAGCATTCACTCCTTCATCCAATTCCACCTCCCAAGCTGGAGACATGGAG
ACATTAACCTTCAGCTGA

Translation (355 aa):
MADNSSDECEEENNKVLREGMPQAPGHRGKDMDPVPPAPASLKCHQTPSHVLERVGWYRESQKHRKEKKK
TSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYEHLPVSAEIKELFQYISRYT
PQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPRPDGKPDNLGLLVLDEPSTKQSDPTVLSLWLTENSKQHN
ITQHMKVKSLEDAEKNPKAIDTWIESISELHRSKPPATVHYTRPMPDIDTLMQEWSPEFEELLGKVSLPT
AEIDCSLAEYIDMICAILDIPVYKSRIQSLHLLFSLYSEFKNSQHFKALAEGKKAFTPSSNSTSQAGDME
TLTFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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