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Report for CCDS8413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8413.1 Public Homo sapiens 11 C2CD2L 24 110 108 CCDS HistoryNCBI Gene:9854Re-query CCDS DB by CCDS ID:8413.1Re-query CCDS DB by GeneID:9854See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8413.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336702.7 ENSP00000338885.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336702.7Link to Ensembl Protein Viewer:ENSP00000338885.3Re-query CCDS DB by Nucleotide ID:ENST00000336702Re-query CCDS DB by Protein ID:ENSP00000338885
Original member Current member NCBI NM_014807.5 NP_055622.3 Accepted alive Link to Nucleotide Sequence:NM_014807.5Link to Protein Sequence:NP_055622.3Re-query CCDS DB by Nucleotide ID:NM_014807Re-query CCDS DB by Protein ID:NP_055622Link to BLAST:NP_055622.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055622.3 707 O14523-2 707 100% 0 0

Chromosomal Locations for CCDS 8413.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119107742 119108095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119110104 119110199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119110561 119110680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119110847 119110957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119111052 119111168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119111263 119111374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119111521 119111629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119112328 119112392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119112482 119112609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119112700 119112874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119113611 119113712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119113852 119113988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119114080 119114365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119116045 119116256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGGATCCGGGCTGGGGGCAGCGGGACGTGGGCTGGGCGGCCTTGCTGATCCTCTTCGCCGCCTCGCTGC
TCACGGTGTTCGCCTGGCTGCTGCAATATGCCCGGGGCTTGTGGCTGGCGCGGGCCCGCGGGGACCGGGG
CCCGGGACCCGCCTTAGCCGGGGAACCCGCGGGTTCCCTGCGGGAGCTGGGCGTGTGGCGCTCGCTGCTG
CGGCTGCGGGCGACTCGGGCTGGCGCCGCCGAGGAGCCAGGAGTCCGGGGCCTCCTGGCGTCACTCTTCG
CCTTCAAGTCTTTCCGGGAGAACTGGCAGCGGGCTTGGGTGCGAGCGCTGAACGAGCAGGCCTGCAGAAA
CGGGAGCTCCATCCAAATCGCCTTTGAGGAGGTGCCCCAACTCCCACCCAGAGCCAGCATCAGTCATGTG
ACCTGCGTAGACCAATCTGAGCATACCATGGTGCTGCGTTGCCAGCTCTCTGCTGAGGAGGTGCGGTTCC
CAGTCTCTGTGACCCAGCAGTCCCCCGCTGCCGTCTCCATGGAGACCTACCACGTCACTCTGACACTGCC
ACCAACACAGTTGGAAGTCAACCTGGAGGAAATCCCTGGTGAGGGGCTGCTCATATCCTGGGCCTTCACT
GATCGCCCAGATCTCAGCCTAACGGTGCTTCCCAAGCTTCAGGCCAGGGAGAGAGGTGAAGAACAAGTGG
AGCTCTCCACAATTGAGGAACTGATCAAGGATGCCATAGTCAGCACCCAGCCAGCCATGATGGTCAACCT
CAGGGCTTGCTCTGCCCCAGGAGGCCTGGTACCCAGTGAGAAGCCACCCATGATGCCCCAGGCTCAGCCA
GCCATCCCCAGACCTAACCGGTTATTCCTACGGCAGCTTCGGGCATCTCACTTGGGAAATGAGCTGGAAG
GCACCGAGGAACTGTGCTGTGTAGCTGAACTCGACAACCCCATGCAGCAGAAGTGGACCAAGCCCGCGAG
GGCTGGATCCGAGGTGGAGTGGACAGAAGACCTGGCACTGGATCTGGGCCCCCAGAGCCGGGAGCTGACC
CTCAAAGTGCTGAGGAGCAGCAGCTGTGGAGACACCGAACTCCTAGGCCAGGCCACACTGCCTGTGGGCT
CCCCCTCCAGACCACTGTCTCGAAGACAGTTGTGCCCACTCACCCCAGGGCCAGGGAAAGCCCTGGGACC
AGCAGCCACCATGGCAGTGGAGCTTCACTATGAGGAGGGCTCTCCCCGGAACCTGGGTACTCCCACCTCC
TCCACTCCACGCCCCAGCATCACACCTACCAAGAAGATTGAGCTTGACCGGACCATCATGCCCGATGGCA
CCATTGTCACCACAGTCACCACTGTCCAGTCCCGGCCCCGTATAGACGGCAAATTAGACTCCCCCTCCCG
CTCCCCGTCCAAGGTGGAGGTGACCGAGAAGACGACAACTGTGCTGAGTGAGAGCAGTGGCCCCAGCAAT
ACCTCCCATAGCAGCAGCCCAGGGGACAGCCACCTTTCCAACGGCTTGGACCCTGTAGCAGAGACAGCGA
TTCGCCAGCTGACAGAGCCCAGTGGGCGGGTGGCCAAGAAGACACCCACCAAGCGCAGCACTCTCATCAT
CTCTGGTGTTTCCAAGGTGCCCATTGCTCAGGACGAGTTGGCGCTATCCCTGGGCTATGCGGCATCCCTG
GAAGCCTCAGTGCAGGATGATGCAGGGACCAGCGGAGGCCCCTCTTCACCTCCCTCAGACCCACCAGCCA
TGTCTCCAGGACCGCTAGATGCCCTCTCTAGTCCCACAAGTGTCCAGGAAGCAGACGAGACAACCCGTTC
GGATATTTCTGAGAGGCCATCTGTGGATGATATTGAGTCGGAAACGGGGTCCACTGGTGCCCTGGAGACC
CGCAGCCTCAAGGATCACAAAGTGAGTTTCCTGCGCAGCGGCACTAAGCTCATCTTCCGCCGGAGGCCTA
GGCAGAAGGAAGCTGGCCTGAGCCAATCACACGATGACCTCTCCAACGCAACGGCCACGCCCAGTGTCCG
AAAGAAGGCCGGCAGCTTTTCTCGCCGCCTTATCAAGCGCTTTTCCTTCAAATCCAAACCCAAGGCCAAT
GGTAACCCCAGCCCCCAGCTCTGA

Translation (707 aa):
MDPGWGQRDVGWAALLILFAASLLTVFAWLLQYARGLWLARARGDRGPGPALAGEPAGSLRELGVWRSLL
RLRATRAGAAEEPGVRGLLASLFAFKSFRENWQRAWVRALNEQACRNGSSIQIAFEEVPQLPPRASISHV
TCVDQSEHTMVLRCQLSAEEVRFPVSVTQQSPAAVSMETYHVTLTLPPTQLEVNLEEIPGEGLLISWAFT
DRPDLSLTVLPKLQARERGEEQVELSTIEELIKDAIVSTQPAMMVNLRACSAPGGLVPSEKPPMMPQAQP
AIPRPNRLFLRQLRASHLGNELEGTEELCCVAELDNPMQQKWTKPARAGSEVEWTEDLALDLGPQSRELT
LKVLRSSSCGDTELLGQATLPVGSPSRPLSRRQLCPLTPGPGKALGPAATMAVELHYEEGSPRNLGTPTS
STPRPSITPTKKIELDRTIMPDGTIVTTVTTVQSRPRIDGKLDSPSRSPSKVEVTEKTTTVLSESSGPSN
TSHSSSPGDSHLSNGLDPVAETAIRQLTEPSGRVAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASL
EASVQDDAGTSGGPSSPPSDPPAMSPGPLDALSSPTSVQEADETTRSDISERPSVDDIESETGSTGALET
RSLKDHKVSFLRSGTKLIFRRRPRQKEAGLSQSHDDLSNATATPSVRKKAGSFSRRLIKRFSFKSKPKAN
GNPSPQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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