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Report for CCDS84317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84317.1 Public Mus musculus 17 Cimip3 23 108 98 CCDS HistoryNCBI Gene:75462Re-query CCDS DB by CCDS ID:84317.1Re-query CCDS DB by GeneID:75462See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073143.6 ENSMUSP00000072887.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073143.6Link to Ensembl Protein Viewer:ENSMUSP00000072887.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073143Re-query CCDS DB by Protein ID:ENSMUSP00000072887
Original member Current member NCBI NM_001347584.1 NP_001334513.1 Accepted alive Link to Nucleotide Sequence:NM_001347584.1Link to Protein Sequence:NP_001334513.1Re-query CCDS DB by Nucleotide ID:NM_001347584Re-query CCDS DB by Protein ID:NP_001334513Link to BLAST:NP_001334513.1

Chromosomal Locations for CCDS 84317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47413562 47413894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47421787 47421795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGTTGAAAGATTCACAGAAATCCTTAGTCCCCAGCCGTGGGCAAAAGATGACATCAGGCACAAAGGCAA
AGGTGCCGCTGACGGCATTGTCCCAGAAATGGAAACGGGACCGAGAGCAGACTCTGGAGGCAGCTTATGT
ACCAGTGGTGGTGGATCCTCGGGGGCAGAACCCAGACACTAGCATCAGGTTCAGTTTCTACAACTCACAG
TATTCCAATTCTCTAAATCCCTTCTACACCCTGCAGAAGCCCACCTGTGGCTACCTGTACCAAAGAGAAA
CCGACCACACCCGAAAACGCTTTGATGTTCCTCCAGCAAACCTGATCTTGTGGCGCACCTAG

Translation (113 aa):
MLKDSQKSLVPSRGQKMTSGTKAKVPLTALSQKWKRDREQTLEAAYVPVVVDPRGQNPDTSIRFSFYNSQ
YSNSLNPFYTLQKPTCGYLYQRETDHTRKRFDVPPANLILWRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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