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Report for CCDS8502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8502.1 Public Homo sapiens 12 SLC6A13 24 110 108 CCDS HistoryNCBI Gene:6540Re-query CCDS DB by CCDS ID:8502.1Re-query CCDS DB by GeneID:6540See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8502.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343164.9 ENSP00000339260.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343164.9Link to Ensembl Protein Viewer:ENSP00000339260.4Re-query CCDS DB by Nucleotide ID:ENST00000343164Re-query CCDS DB by Protein ID:ENSP00000339260
Original member Current member NCBI NM_016615.5 NP_057699.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016615.5Link to Protein Sequence:NP_057699.2Re-query CCDS DB by Nucleotide ID:NM_016615Re-query CCDS DB by Protein ID:NP_057699Link to BLAST:NP_057699.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057699.2 602 Q9NSD5-1 602 100% 0 0

Chromosomal Locations for CCDS 8502.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 220948 221070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 221376 221546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 222532 222632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 223132 223234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 223992 224129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 224401 224513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 226390 226514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 227565 227668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 235090 235224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 237158 237290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 237926 238010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 242614 242754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 243679 243813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 259851 260052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGATAGCAGGGTCTCAGGCACAACCAGTAATGGAGAGACAAAACCAGTGTATCCAGTCATGGAAAAGA
AGGAGGAAGATGGCACCCTGGAGCGGGGGCACTGGAACAACAAGATGGAGTTTGTGCTGTCAGTGGCTGG
GGAGATCATTGGCTTAGGCAACGTCTGGAGGTTTCCCTATCTCTGCTACAAAAATGGGGGAGGTGCCTTC
TTCATCCCCTACCTCGTCTTCCTCTTTACCTGTGGCATTCCTGTCTTCCTTCTGGAGACAGCACTAGGCC
AGTACACTAGCCAGGGAGGCGTCACAGCCTGGAGGAAGATCTGCCCCATCTTTGAGGGCATTGGCTATGC
CTCCCAGATGATCGTCATCCTCCTCAACGTCTACTACATCATTGTGTTGGCCTGGGCCCTGTTCTACCTC
TTCAGCAGCTTCACCATCGACCTGCCCTGGGGCGGCTGCTACCATGAGTGGAACACAGAACACTGTATGG
AGTTCCAGAAGACCAACGGCTCCCTGAATGGTACCTCTGAGAATGCCACCTCTCCTGTCATCGAGTTCTG
GGAGCGGCGGGTCTTGAAGATCTCTGATGGGATCCAGCACCTGGGGGCCCTGCGCTGGGAGCTGGCTCTG
TGCCTCCTGCTGGCCTGGGTCATCTGCTACTTCTGCATCTGGAAGGGGGTGAAGTCCACAGGCAAGGTGG
TGTACTTCACGGCCACATTTCCTTACCTCATGCTGGTGGTCCTGTTAATTCGAGGGGTGACGTTGCCTGG
GGCAGCCCAAGGAATTCAGTTTTACCTGTACCCAAACCTCACGCGTCTGTGGGATCCCCAGGTGTGGATG
GATGCAGGCACCCAGATATTCTTCTCCTTCGCCATCTGTCTTGGGTGCCTGACAGCCCTGGGCAGCTACA
ACAAGTACCACAACAACTGCTACAGGGACTGCATCGCCCTCTGCTTCCTCAACAGCGGCACCAGCTTTGT
GGCCGGCTTTGCCATCTTCTCCATCCTGGGCTTCATGTCTCAGGAGCAGGGGGTGCCCATTTCTGAGGTG
GCCGAGTCAGGCCCTGGCCTGGCTTTCATCGCTTACCCGCGGGCTGTGGTGATGCTGCCCTTCTCTCCTC
TCTGGGCCTGCTGTTTCTTCTTCATGGTCGTTCTCCTGGGACTGGATAGCCAGTTTGTGTGTGTAGAAAG
CCTGGTGACAGCGCTGGTGGACATGTACCCTCACGTGTTCCGCAAGAAGAACCGGAGGGAAGTCCTCATC
CTTGGAGTATCTGTCGTCTCCTTCCTTGTGGGGCTGATCATGCTCACAGAGGGCGGAATGTACGTGTTCC
AGCTCTTTGACTACTATGCGGCCAGTGGCATGTGCCTCCTGTTCGTGGCCATCTTCGAGTCCCTCTGTGT
GGCTTGGGTTTACGGAGCCAAGCGCTTCTACGACAACATCGAAGACATGATTGGGTACAGGCCATGGCCT
CTTATCAAATACTGTTGGCTCTTCCTCACACCAGCTGTGTGCACAGCCACCTTTCTCTTCTCCCTGATAA
AGTACACTCCGCTGACCTACAACAAGAAGTACACGTACCCGTGGTGGGGCGATGCCCTGGGCTGGCTCCT
GGCTCTGTCCTCCATGGTCTGCATTCCTGCCTGGAGCCTCTACAGACTCGGAACCCTCAAGGGCCCCTTC
AGAGAGAGAATCCGTCAGCTCATGTGCCCAGCCGAGGACCTGCCCCAGCGGAACCCAGCAGGACCCTCGG
CTCCCGCCACCCCCAGGACCTCACTGCTCAGACTCACAGAGCTAGAGTCTCACTGCTAG

Translation (602 aa):
MDSRVSGTTSNGETKPVYPVMEKKEEDGTLERGHWNNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAF
FIPYLVFLFTCGIPVFLLETALGQYTSQGGVTAWRKICPIFEGIGYASQMIVILLNVYYIIVLAWALFYL
FSSFTIDLPWGGCYHEWNTEHCMEFQKTNGSLNGTSENATSPVIEFWERRVLKISDGIQHLGALRWELAL
CLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGVTLPGAAQGIQFYLYPNLTRLWDPQVWM
DAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDCIALCFLNSGTSFVAGFAIFSILGFMSQEQGVPISEV
AESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVVLLGLDSQFVCVESLVTALVDMYPHVFRKKNRREVLI
LGVSVVSFLVGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGAKRFYDNIEDMIGYRPWP
LIKYCWLFLTPAVCTATFLFSLIKYTPLTYNKKYTYPWWGDALGWLLALSSMVCIPAWSLYRLGTLKGPF
RERIRQLMCPAEDLPQRNPAGPSAPATPRTSLLRLTELESHC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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