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Report for CCDS85023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85023.1 Public Mus musculus 6 Tnpo3 23 108 98 CCDS HistoryNCBI Gene:320938Re-query CCDS DB by CCDS ID:85023.1Re-query CCDS DB by GeneID:320938See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 85023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115251.7 ENSMUSP00000110906.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115251.7Link to Ensembl Protein Viewer:ENSMUSP00000110906.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115251Re-query CCDS DB by Protein ID:ENSMUSP00000110906
Original member Current member NCBI NM_001347079.2 NP_001334008.1 Accepted alive Link to Nucleotide Sequence:NM_001347079.2Link to Protein Sequence:NP_001334008.1Re-query CCDS DB by Nucleotide ID:NM_001347079Re-query CCDS DB by Protein ID:NP_001334008Link to BLAST:NP_001334008.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334008.1 929 Q6P2B1-2 929 100% 0 0

Chromosomal Locations for CCDS 85023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29543300 29543360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29551852 29551964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29554795 29554980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29555153 29555309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29556978 29557072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29558752 29558868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29560082 29560222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29561360 29561420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29562858 29562934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29565171 29565262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29565664 29565855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29568854 29568993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29571036 29571127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29572586 29572693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29575006 29575152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29578463 29578601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29579521 29579696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29582166 29582309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29586038 29586194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29588023 29588096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29589029 29589229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29609366 29609485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGGAGGGAGCCAAGCCAACCTTGCAGCTCGTGTACCAGGCGGTGCAAGCGCTTTACCACGACCCGGATC
CCAGCGGAAAGGAGCGCGCCTCGTTTTGGCTTGGGGAGCTGCAGCGTTCGGTTCACGCTTGGGAGATTTC
TGATCAATTGTTACAGATCCGACAGGATGTGGAATCATGCTATTTCGCTGCCCAGACCATGAAAATGAAG
ATTCAGACCTCATTTTATGAGCTCCCCACAGACTCTCATGCTTCTTTAAGGGACTCATTGCTAACTCACA
TTCAGAACTTGAAAGACTTGTCGCCTGTCATTGTAACACAGCTGGCTTTAGCAATAGCAGACCTCGCCCT
ACAGATGCCTTCTTGGAAAGGATGCGTACAAACATTGGTAGAAAAATATAGCAATGACGTAACTTCTTTA
CCTTTTTTGCTGGAAATCCTTACAGTGTTACCCGAAGAAGTACATAGTCGTTCCTTGCGGATTGGGGCCA
ACAGGCGGACAGAAATTATAGAAGACTTAGCCTTCTACTCTAGTACCGTGGTATCTTTATTGATGACATG
TGTAGAGAAAGCAGGAACCGATGAGAAGATGCTTATGAAGGTCTTCCGATGTTTGGGAAGTTGGTTTAAC
TTGGGGGTTTTGGACAGTAACTTCATGGCTAATAATAAGTTATTAGCACTCCTTTTTGAGGTCTTGCAAC
AAGATAAGACCTCATCTAACCTACACGAAGCTGCTTCAGACTGTGTATGCTCAGCTCTCTATGCTATTGA
AAATGTAGAGACTAACTTGCCATTGGCCATGCAGCTTTTTCAGGGAGTCCTGACATTGGAGACTGCATAT
CATATGGCTGTGGCACGGGAAGATTTGGACAAAGTTCTGAATTACTGCCGAATTTTCACCGAACTATGTG
AAACTTTCCTGGAAAAAATTGTCTGTACTCCAGGCCAAGGTCTGGGAGATCTTCGAACTTTGGAATTGCT
TCTTATCTGTGCAGGCCACCCTCAGTATGAGGTAGTAGAAATTTCCTTTAACTTTTGGTACCGACTAGGA
GAACATTTATACAAAACCAATGATGAAGTTATTCACAGCATCTTCAAAGCGTACATTCAGAGGCTGCTTC
ATGCCTTGGCTCGACACTGCCAGTTGGAACCAGACCATGAGGGAGTTCCTGAAGAGACCGATGACTTTGG
GGAGTTTCGAATGAGAGTGTCAGACCTGGTGAAGGACTTGATCTTCCTGATTGGATCTATGGAGTGTTTT
GCTCAGTTGTATTCTACTCTGAAGGAAGGCAACCCACCCTGGGAGGTGACAGAAGCGGTTCTCTTTATCA
TGGCTGCTATAGCAAAGAGTGTGGATCCGGAGAACAACCCTACACTTGTGGAGGTACTAGAGGGAGTTGT
CCATCTCCCAGAGACCGTGCATACAGCTGTGCGGTACACTAGCATTGAGTTGGTTGGTGAGATGAGTGAA
GTGGTGGACCGGAATCCCCAGTTCCTGGACCCTGTATTGGGCTATTTGATGAAAGGCCTGTGTGAAAAGC
CTCTGGCTTCTGCTGCAGCCAAAGCCATTCATAACATTTGTTCCGTTTGTCGCGATCATATGGCTCAGCA
CTTTAATGGACTCCTAGAAATTGCCCACTCCCTTGATTCTTTCATGTTGTCTCCCGAAGCTGCTGTGGGT
TTGCTAAAAGGAACAGCTCTTGTCCTAGCAAGACTACCTTTGGATAAGATTACAGAATGTCTAAGTGAGT
TATGTTCTGTTCAGGTTATGGCATTGAAAAAGCTGTTGTCTCAGGAGCCCAGCAATGGCATTTCTTCAGA
TCCCACTGTCTTCTTAGATCGCCTGGCAGTAATATTTAGACACACCAATCCTATTGTAGAAAATGGACAG
ACTCATCCATGCCAAAAAGTCATCCAGGAAATATGGCCAGTTTTGTCTGAGACTCTAAATAAGCACCGAG
CCGACAATCGAATTGTAGAGCGTTGTTGTAGATGCCTGCGCTTTGCGGTTCGTTGTGTAGGCAAAGGATC
TGCAGCACTGCTACAGCCACTAGTTACACAGATGGTGAATGTGTACCATGTACATCAGCATTCCTGTTTC
CTCTACCTTGGCAGTATCCTTGTGGATGAGTACGGCATGGAAGAAGGCTGTCGGCAGGGGTTATTAGACA
TGCTCCAGGCGCTATGCATTCCCACCTTTCAGCTCCTAGAACAGCAGAATGGCCTCCAAAATCACCCTGA
CACTGTAGATGACCTATTCAGGTTAGCCACCCGATTTATTCAGCGAAGCCCTGTCACCTTGCTGAGGAGC
CAGGTTGTCATCCCAATCTTACAGTGGGCCATTGCATCAACCACTTTGGACCACCGAGATGCCAATTCCA
GTGTCATGAGATTTCTGCGAGACCTCATCCACACAGGAGTAGCCAATGATTTATCTGTTTTCTTACAGCA
TGAAGAAGATTTTGAATTGCGGAAGGAACTAATTGGACAGGTGATGAGCCAGCTTGGCCAGCAACTTGTC
AGCCAGCTGCTCCACACATGCTGCTTTTGTCTTCCCCCCTACACCCTACCCGACGTGGCTGAAGTGCTCT
GGGAGATCATGCAGGTTGACAGACCGACTTTCTGTCGGTGGCTAGAGAATTCCTTGAAAGGTTTGCCAAA
AGAGACCACAGTGGGAGCTGTCACAGTGACACATAAACAACTTACAGATTTCCACAAGCAAGTCACTAGT
GCCGAGGAATGTAAGCAAGTTTGCTGGGCCTTGAGAGACTTCACCAGGTTGTTTCGATAG

Translation (929 aa):
MEGAKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESCYFAAQTMKMK
IQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSL
PFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFN
LGVLDSNFMANNKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAY
HMAVAREDLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLG
EHLYKTNDEVIHSIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECF
AQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVHLPETVHTAVRYTSIELVGEMSE
VVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIAHSLDSFMLSPEAAVG
LLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPSNGISSDPTVFLDRLAVIFRHTNPIVENGQ
THPCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCF
LYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRS
QVVIPILQWAIASTTLDHRDANSSVMRFLRDLIHTGVANDLSVFLQHEEDFELRKELIGQVMSQLGQQLV
SQLLHTCCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHKQVTS
AEECKQVCWALRDFTRLFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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