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Report for CCDS85130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85130.1 Public Mus musculus 6 Atp2b2 23 108 98 CCDS HistoryNCBI Gene:11941Re-query CCDS DB by CCDS ID:85130.1Re-query CCDS DB by GeneID:11941See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85130.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101044.8 ENSMUSP00000098605.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101044.8Link to Ensembl Protein Viewer:ENSMUSP00000098605.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101044Re-query CCDS DB by Protein ID:ENSMUSP00000098605
Original member NCBI NM_001347365.1 NP_001334294.1 Updated not alive Link to Nucleotide Sequence:NM_001347365.1Link to Protein Sequence:NP_001334294.1Re-query CCDS DB by Nucleotide ID:NM_001347365Re-query CCDS DB by Protein ID:NP_001334294
Current member NCBI NM_001347365.2 NP_001334294.1 Accepted alive Link to Nucleotide Sequence:NM_001347365.2Link to Protein Sequence:NP_001334294.1Re-query CCDS DB by Nucleotide ID:NM_001347365Re-query CCDS DB by Protein ID:NP_001334294Link to BLAST:NP_001334294.1

Chromosomal Locations for CCDS 85130.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113748537 113748848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113756832 113757014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113758919 113759026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113759123 113759334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113760642 113760855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113762765 113762956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113763538 113763644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113765721 113765808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113765988 113766167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113773261 113773495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113774205 113774446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113789753 113789995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113793666 113793880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113796239 113796397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113797110 113797151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113802486 113802545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113803747 113803779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113805461 113805586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113812785 113812910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113813787 113814044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113817148 113817345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113842132 113842330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3732 nt):
ATGGGTGACATGACCAACAGCGACTTTTACTCCAAAAACCAAAGAAATGAGTCGAGCCATGGGGGCGAGT
TCGGGTGCACCATGGAGGAGCTGCGCTCCCTCATGGAGCTGCGGGGCACCGAGGCTGTGGTCAAGATCAA
GGAGACGTATGGGGACACTGAAGCCATCTGCCGGCGCCTCAAAACCTCGCCTGTTGAAGGTTTACCAGGC
ACTGCTCCAGACTTGGAAAAGAGGAAACAGATTTTTGGGCAAAACTTCATACCTCCAAAGAAACCAAAAA
CCTTCCTGCAGCTGGTGTGGGAAGCGCTACAGGACGTGACACTTATCATCCTGGAGATCGCGGCCATCAT
CTCCCTGGGACTGTCCTTCTACCACCCACCGGGAGAGAGCAATGAAGGATGTGCCACGGCCCAGGGTGGG
GCAGAGGATGAAGGTGAAGCAGAAGCAGGCTGGATTGAGGGGGCTGCCATCCTGCTGTCAGTCATCTGTG
TGGTCCTGGTCACAGCCTTCAATGACTGGAGTAAGGAGAAACAGTTCCGGGGCCTGCAGAGCCGAATTGA
GCAGGAGCAGAAGTTCACTGTGGTCCGGGCCGGCCAGGTGGTTCAGATCCCTGTGGCCGAGATCGTGGTC
GGGGACATTGCCCAGATCAAATATGGTGACCTTCTTCCCGCTGATGGCCTCTTCATCCAGGGAAATGACC
TCAAAATTGATGAAAGCTCACTCACAGGGGAATCTGACCAGGTGCGCAAGTCTGTGGATAAGGACCCCAT
GTTGCTGTCAGGAACCCATGTGATGGAGGGCTCAGGACGGATGGTGGTTACTGCTGTGGGTGTGAACTCT
CAGACTGGCATCATATTTACCCTGCTTGGGGCTGGTGGTGAAGAGGAAGAGAAGAAAGACAAAAAAGGTG
TGAAGAAGGGGGATGGCCTTCAGATACCAGCGGCCGACGGCGCAGCGCCTGCAAACGCTGCAGGTAGCGC
AAATGCCAGCCTAGTCAATGGTAAAATGCAGGATGGCAGTGCCGACAGCAGCCAGAGCAAAGCCAAGCAG
CAGGATGGGGCAGCTGCCATGGAGATGCAGCCTCTGAAGAGTGCAGAGGGCGGCGATGCAGATGACAAGA
AGAAAGCCAACATGCACAAGAAAGAGAAGTCGGTGCTTCAGGGCAAGCTCACCAAACTGGCTGTGCAGAT
AGGCAAGGCGGGCCTGGTGATGTCGGCCATCACAGTGATCATCCTGGTACTCTACTTCACCGTGGACACC
TTCGTGGTCAACAAGAAGCCATGGCTGACGGAATGCACACCCGTCTACGTACAGTACTTTGTCAAGTTCT
TCATCATTGGTGTGACGGTGCTGGTGGTCGCTGTGCCCGAGGGCCTCCCTCTGGCTGTCACCATCTCACT
GGCCTATTCTGTGAAGAAAATGATGAAGGACAACAACCTGGTACGCCACCTGGATGCCTGTGAGACCATG
GGCAATGCCACAGCCATCTGCTCAGACAAGACAGGAACGCTGACCACCAACCGCATGACCGTGGTCCAGG
CCTATGTCGGTGACGTCCACTACAAGGAGATCCCCGATCCCAGCTCCATCAATGCCAAGACGCTGGAGCT
GCTGGTCAACGCCATTGCCATCAACAGCGCCTACACCACCAAGATCCTTCCCCCAGAAAAAGAGGGAGCC
CTGCCCCGGCAGGTGGGCAACAAGACAGAGTGCGGCCTGCTGGGCTTTGTGCTGGACTTGAGGCAGGACT
ACGAGCCGGTGCGCAGCCAGATGCCAGAGGAGAAGCTGTATAAGGTGTACACCTTCAACTCCGTGCGCAA
GTCCATGAGCACCGTCATCAAGATGCCCGACGAGAGCTTCCGCATGTACAGCAAGGGCGCCTCGGAGATT
GTGCTCAAAAAGTGCTGCAAGATCCTCAGTGGGGCAGGGGAAGCCCGTGTCTTCCGGCCCCGAGACAGGG
ATGAGATGGTTAAGAAGGTGATTGAGCCCATGGCCTGTGACGGGCTCCGTACCATCTGCGTGGCCTATCG
TGACTTCCCCAGCAGCCCTGAGCCTGACTGGGACAATGAGAATGACATTCTCAATGAACTCACGTGCATC
TGCGTGGTGGGCATCGAAGACCCAGTACGACCTGAGGTCCCAGAAGCCATCCGCAAGTGCCAGCGGGCAG
GTATCACAGTCCGCATGGTCACCGGTGACAATATCAACACAGCCCGGGCCATCGCCATCAAGTGTGGCAT
TATCCACCCTGGAGAGGACTTCCTGTGCCTGGAAGGCAAAGAATTCAATCGGAGGATTCGCAACGAGAAG
GGGGAGATTGAGCAGGAGCGGATTGACAAGATCTGGCCAAAGCTGAGGGTGCTGGCTCGCTCCTCGCCCA
CGGATAAGCACACGCTGGTCAAAGGCATCATCGACAGTACACACACTGAGCAGCGGCAGGTGGTGGCTGT
GACAGGGGATGGGACCAACGACGGGCCTGCTCTCAAGAAGGCAGATGTGGGCTTCGCAATGGGCATCGCA
GGCACAGATGTGGCCAAGGAGGCCTCAGACATCATCCTGACAGATGACAACTTCAGCAGCATCGTCAAGG
CAGTGATGTGGGGCCGTAACGTCTATGACAGCATATCCAAATTCCTGCAGTTCCAGCTGACTGTCAACGT
GGTGGCGGTGATCGTGGCCTTCACGGGCGCCTGCATTACACAGGACTCCCCTCTCAAGGCTGTGCAGATG
CTCTGGGTGAACCTCATCATGGACACGTTTGCCTCCCTGGCCCTGGCCACAGAGCCACCTACGGAGACTC
TGCTTCTGAGGAAACCGTACGGTCGCAACAAGCCGCTCATCTCGAGGACCATGATGAAGAACATCCTGGG
CCACGCCGTCTACCAGCTCACCCTCATCTTCACCCTGCTCTTCGTGGGTGAGAAGATGTTCCAGATCGAC
AGCGGAAGGAACGCCCCGCTGCACTCACCACCCTCAGAGCACTACACCATCATCTTCAACACCTTCGTCA
TGATGCAGCTTTTCAACGAGATCAACGCCCGCAAGATCCACGGCGAGCGCAACGTCTTTGACGGGATCTT
CCGGAACCCCATCTTCTGCACCATCGTTCTTGGCACTTTCGCCATCCAGATAGTGATCGTGCAGTTTGGC
GGGAAGCCCTTCAGCTGCTCCCCACTCCAGCTGGACCAGTGGATGTGGTGCATCTTCATAGGCCTGGGAG
AGCTCGTCTGGGGCCAGGTCATCGCCACCATCCCTACCAGCAGGCTCAAGTTCCTGAAAGAGGCAGGGCG
TCTAACACAGAAGGAGGAGATCCCCGAGGAGGAGTTAAATGAGGATGTGGAAGAGATAGACCACGCAGAG
CGGGAGCTTCGCCGTGGCCAGATCCTGTGGTTCCGGGGCCTGAATCGGATCCAGACACAGATCCGCGTCG
TGAAGGCGTTCCGTAGCTCTCTCTATGAAGGGTTAGAAAAACCCGAGTCTCGAACCTCCATCCATAACTT
CATGGCTCATCCTGAATTCCGGATCGAAGATTCCCAGCCCCACATCCCCCTCATCGATGACACCGACCTG
GAAGAAGATGCCGCGCTCAAGCAGAACTCGAGCCCGCCGTCCTCGCTCAACAAGAACAATAGCGCCATCG
ACAGCGGGATCAACCTGACGACCGACACGAGCAAATCAGCTACCTCTTCAAGTCCAGGGAGCCCCATCCA
CAGCCTGGAGACGTCGCTTTAG

Translation (1243 aa):
MGDMTNSDFYSKNQRNESSHGGEFGCTMEELRSLMELRGTEAVVKIKETYGDTEAICRRLKTSPVEGLPG
TAPDLEKRKQIFGQNFIPPKKPKTFLQLVWEALQDVTLIILEIAAIISLGLSFYHPPGESNEGCATAQGG
AEDEGEAEAGWIEGAAILLSVICVVLVTAFNDWSKEKQFRGLQSRIEQEQKFTVVRAGQVVQIPVAEIVV
GDIAQIKYGDLLPADGLFIQGNDLKIDESSLTGESDQVRKSVDKDPMLLSGTHVMEGSGRMVVTAVGVNS
QTGIIFTLLGAGGEEEEKKDKKGVKKGDGLQIPAADGAAPANAAGSANASLVNGKMQDGSADSSQSKAKQ
QDGAAAMEMQPLKSAEGGDADDKKKANMHKKEKSVLQGKLTKLAVQIGKAGLVMSAITVIILVLYFTVDT
FVVNKKPWLTECTPVYVQYFVKFFIIGVTVLVVAVPEGLPLAVTISLAYSVKKMMKDNNLVRHLDACETM
GNATAICSDKTGTLTTNRMTVVQAYVGDVHYKEIPDPSSINAKTLELLVNAIAINSAYTTKILPPEKEGA
LPRQVGNKTECGLLGFVLDLRQDYEPVRSQMPEEKLYKVYTFNSVRKSMSTVIKMPDESFRMYSKGASEI
VLKKCCKILSGAGEARVFRPRDRDEMVKKVIEPMACDGLRTICVAYRDFPSSPEPDWDNENDILNELTCI
CVVGIEDPVRPEVPEAIRKCQRAGITVRMVTGDNINTARAIAIKCGIIHPGEDFLCLEGKEFNRRIRNEK
GEIEQERIDKIWPKLRVLARSSPTDKHTLVKGIIDSTHTEQRQVVAVTGDGTNDGPALKKADVGFAMGIA
GTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQM
LWVNLIMDTFASLALATEPPTETLLLRKPYGRNKPLISRTMMKNILGHAVYQLTLIFTLLFVGEKMFQID
SGRNAPLHSPPSEHYTIIFNTFVMMQLFNEINARKIHGERNVFDGIFRNPIFCTIVLGTFAIQIVIVQFG
GKPFSCSPLQLDQWMWCIFIGLGELVWGQVIATIPTSRLKFLKEAGRLTQKEEIPEEELNEDVEEIDHAE
RELRRGQILWFRGLNRIQTQIRVVKAFRSSLYEGLEKPESRTSIHNFMAHPEFRIEDSQPHIPLIDDTDL
EEDAALKQNSSPPSSLNKNNSAIDSGINLTTDTSKSATSSSPGSPIHSLETSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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