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Report for CCDS85332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85332.1 Public Mus musculus 7 Ctsc 23 108 98 CCDS HistoryNCBI Gene:13032Re-query CCDS DB by CCDS ID:85332.1Re-query CCDS DB by GeneID:13032See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000131108.8 ENSMUSP00000147006.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131108.8Link to Ensembl Protein Viewer:ENSMUSP00000147006.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131108Re-query CCDS DB by Protein ID:ENSMUSP00000147006
Original member NCBI NM_001311790.1 NP_001298719.1 Updated not alive Link to Nucleotide Sequence:NM_001311790.1Link to Protein Sequence:NP_001298719.1Re-query CCDS DB by Nucleotide ID:NM_001311790Re-query CCDS DB by Protein ID:NP_001298719
Current member NCBI NM_001311790.2 NP_001298719.1 Accepted alive Link to Nucleotide Sequence:NM_001311790.2Link to Protein Sequence:NP_001298719.1Re-query CCDS DB by Nucleotide ID:NM_001311790Re-query CCDS DB by Protein ID:NP_001298719Link to BLAST:NP_001298719.1

Chromosomal Locations for CCDS 85332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 88278203 88278374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88281387 88281532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88286894 88286978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88288650 88288660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGGGTCCCTGGACCCACTCCTTGCGCGCCGTCCTGCTGCTGGTGCTTTTGGGAGTCTGCACCGTGCGCT
CCGACACTCCTGCCAACTGCACCTACCCTGATCTGCTGGGCACCTGGGTGTTCCAGGTGGGCCCTAGAAG
TTCCCGAAGCGACATTAACTGCTCGGTGATGGAAGCAACAGAAGAAAAGGTAGTGGTACACCTTAAGAAG
TTGGATACTGCCTACGACGAGCTGGGCAATTCCGGGCATTTTACCCTCATTTACAACCAAGGCTTCGAGA
TTGTGTTGAATGACTACAAATGGTTTGCGTTTTTCAAGGATGTCACTGATTTTATCAGTCAGTTGTTCAT
GCAGCTGGGAACTGTGGGAATGTATGATTTGCCACATCTGAGGAACAAACTGGTTATTAAATAG

Translation (137 aa):
MGPWTHSLRAVLLLVLLGVCTVRSDTPANCTYPDLLGTWVFQVGPRSSRSDINCSVMEATEEKVVVHLKK
LDTAYDELGNSGHFTLIYNQGFEIVLNDYKWFAFFKDVTDFISQLFMQLGTVGMYDLPHLRNKLVIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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