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Report for CCDS8534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8534.1 Public Homo sapiens 12 KCNA6 24 110 108 CCDS HistoryNCBI Gene:3742Re-query CCDS DB by CCDS ID:8534.1Re-query CCDS DB by GeneID:3742See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8534.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280684.4 ENSP00000280684.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000280684.4Link to Ensembl Protein Viewer:ENSP00000280684.3Re-query CCDS DB by Nucleotide ID:ENST00000280684Re-query CCDS DB by Protein ID:ENSP00000280684
Original member Current member NCBI NM_002235.5 NP_002226.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002235.5Link to Protein Sequence:NP_002226.1Re-query CCDS DB by Nucleotide ID:NM_002235Re-query CCDS DB by Protein ID:NP_002226Link to BLAST:NP_002226.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002226.1 529 P17658 529 100% 0 0

Chromosomal Locations for CCDS 8534.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4810042 4811631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGAGATCGGAGAAATCCCTTACGCTGGCGGCGCCGGGGGAGGTCCGTGGGCCGGAGGGAGAGCAACAGG
ATGCGGGAGACTTCCCGGAGGCCGGCGGGGGCGGGGGCTGCTGTAGTAGCGAGCGGCTGGTGATCAATAT
CTCCGGGCTGCGCTTTGAGACACAATTGCGCACCCTGTCGCTGTTTCCGGACACGCTGCTCGGAGACCCT
GGCCGGCGAGTCCGCTTCTTCGACCCCCTGAGGAACGAGTACTTCTTCGACCGCAACCGGCCCAGCTTCG
ACGCCATCCTCTACTACTACCAGTCTGGGGGCCGCCTGCGGAGGCCGGTCAACGTGCCCCTGGACATTTT
CCTGGAGGAGATCCGCTTCTACCAGCTGGGGGACGAGGCCCTGGCGGCCTTCCGGGAGGACGAGGGCTGC
CTGCCCGAAGGTGGCGAGGACGAGAAGCCGCTGCCCTCCCAGCCCTTCCAGCGCCAGGTGTGGCTGCTCT
TTGAGTACCCAGAGAGCTCTGGGCCGGCCAGGGGCATCGCCATCGTCTCCGTGTTGGTCATTCTCATCTC
CATAGTCATCTTTTGCCTGGAGACCTTACCCCAGTTCCGTGTAGATGGTCGAGGTGGAAACAATGGTGGT
GTGAGTCGAGTCTCCCCAGTTTCCAGGGGGAGTCAGGAGGAAGAGGAGGATGAAGACGATTCCTACACAT
TTCATCATGGCATCACCCCTGGGGAAATGGGGACCGGGGGCTCCTCCTCACTCAGTACTCTTGGGGGCTC
CTTCTTTACAGACCCCTTCTTTCTGGTGGAGACGCTGTGCATTGTCTGGTTCACTTTTGAGCTCCTGGTG
CGCTTCTCCGCCTGCCCTAGCAAGCCGGCCTTCTTCCGGAACATCATGAACATCATTGACTTGGTGGCTA
TCTTCCCCTACTTCATCACCCTGGGCACTGAGCTGGTGCAGCAGCAGGAGCAGCAACCAGCCAGTGGAGG
AGGCGGCCAGAATGGGCAGCAGGCCATGTCCCTGGCCATCCTCCGAGTCATCCGCCTGGTCCGGGTGTTC
CGCATCTTCAAGCTCTCCCGCCACTCCAAGGGGCTGCAGATCCTGGGCAAGACCTTGCAGGCCTCCATGA
GGGAGCTGGGGCTGCTCATCTTCTTCCTCTTCATCGGGGTCATCCTCTTCTCCAGTGCCGTCTACTTCGC
AGAGGCTGACGATGACGATTCGCTTTTTCCCAGCATCCCGGATGCCTTCTGGTGGGCAGTGGTTACAATG
ACCACGGTAGGTTACGGGGACATGTACCCCATGACTGTGGGGGGAAAGATCGTGGGCTCGCTGTGTGCCA
TCGCTGGGGTCCTCACCATTGCCCTGCCTGTGCCCGTCATCGTCTCCAACTTCAACTACTTCTACCACCG
GGAGACGGAGCAGGAGGAGCAAGGCCAGTATACCCACGTCACTTGTGGGCAGCCTGCGCCGGACCTGAGG
GCAACTGACAACGGACTTGGCAAGCCTGACTTCCCCGAGGCTAACCGGGAACGGAGACCCAGCTACCTTC
CTACACCACATCGGGCCTATGCAGAGAAAAGAATGCTCACGGAGGTCTGA

Translation (529 aa):
MRSEKSLTLAAPGEVRGPEGEQQDAGDFPEAGGGGGCCSSERLVINISGLRFETQLRTLSLFPDTLLGDP
GRRVRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFLEEIRFYQLGDEALAAFREDEGC
LPEGGEDEKPLPSQPFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETLPQFRVDGRGGNNGG
VSRVSPVSRGSQEEEEDEDDSYTFHHGITPGEMGTGGSSSLSTLGGSFFTDPFFLVETLCIVWFTFELLV
RFSACPSKPAFFRNIMNIIDLVAIFPYFITLGTELVQQQEQQPASGGGGQNGQQAMSLAILRVIRLVRVF
RIFKLSRHSKGLQILGKTLQASMRELGLLIFFLFIGVILFSSAVYFAEADDDDSLFPSIPDAFWWAVVTM
TTVGYGDMYPMTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEQEEQGQYTHVTCGQPAPDLR
ATDNGLGKPDFPEANRERRPSYLPTPHRAYAEKRMLTEV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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