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Report for CCDS8558.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
8558.1 |
Public |
Homo sapiens |
12 |
COPS7A |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:50813](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:8558.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:50813](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 8558.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000229251.7 |
ENSP00000229251.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000229251.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000229251.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000229251](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000229251](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000543155.6 |
ENSP00000438115.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000543155.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000438115.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000543155](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000438115](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000534877.5 |
ENSP00000438363.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000534877.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000438363.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000534877](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000438363](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000539735.5 |
ENSP00000441852.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000539735.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000441852.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000539735](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000441852](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000534947.5 |
ENSP00000446039.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000534947.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000446039.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000534947](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000446039](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001164093.2 |
NP_001157565.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001164093.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001157565.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001164093](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001157565](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001157565.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001164094.2 |
NP_001157566.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001164094.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001157566.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001164094](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001157566](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001157566.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001164095.3 |
NP_001157567.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001164095.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001157567.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001164095](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001157567](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001157567.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_016319.4 |
NP_057403.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_016319.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_057403.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_016319](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_057403](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_057403.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 8558.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (828 nt): ATGAGTGCGGAAGTGAAGGTGACAGGGCAGAACCAGGAGCAATTTCTGCTCCTAGCCAAGTCGGCCAAGG GGGCAGCGCTGGCCACACTCATCCATCAGGTGCTGGAGGCCCCTGGTGTCTACGTGTTTGGAGAACTGCT GGACATGCCCAATGTTAGAGAGCTGGCTGAGAGTGACTTTGCCTCTACCTTCCGGCTGCTCACAGTGTTT GCTTATGGGACATACGCTGACTACTTAGCTGAAGCCCGGAATCTTCCTCCACTAACAGAGGCTCAGAAGA ATAAGCTTCGACACCTCTCAGTTGTCACCCTGGCTGCTAAAGTAAAGTGTATCCCATATGCAGTGTTGCT GGAGGCTCTTGCCCTGCGTAATGTGCGGCAGCTGGAAGACCTTGTGATTGAGGCTGTGTATGCTGACGTG CTTCGTGGCTCCCTGGACCAGCGCAACCAGCGGCTCGAGGTTGACTACAGCATCGGGCGGGACATCCAGC GCCAGGACCTCAGTGCCATTGCCCGAACCCTGCAGGAATGGTGTGTGGGCTGTGAGGTCGTGCTGTCAGG CATTGAGGAGCAGGTGAGCCGTGCCAACCAACACAAGGAGCAGCAGCTGGGCCTGAAGCAGCAGATTGAG AGTGAGGTTGCCAACCTTAAAAAAACCATTAAAGTTACGACGGCAGCAGCAGCCGCAGCCACATCTCAGG ACCCTGAGCAACACCTGACTGAGCTGAGGGAACCAGCTCCTGGCACCAACCAGCGCCAGCCCAGCAAGAA AGCCTCAAAGGGCAAGGGGCTCCGAGGGAGCGCCAAGATTTGGTCCAAGTCGAATTGA
Translation (275 aa): MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVF AYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADV LRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIE SEVANLKKTIKVTTAAAAAATSQDPEQHLTELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
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