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Report for CCDS8572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8572.1 Public Homo sapiens 12 LPCAT3 24 110 108 CCDS HistoryNCBI Gene:10162Re-query CCDS DB by CCDS ID:8572.1Re-query CCDS DB by GeneID:10162See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8572.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261407.9 ENSP00000261407.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261407.9Link to Ensembl Protein Viewer:ENSP00000261407.4Re-query CCDS DB by Nucleotide ID:ENST00000261407Re-query CCDS DB by Protein ID:ENSP00000261407
Original member Current member NCBI NM_005768.6 NP_005759.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005768.6Link to Protein Sequence:NP_005759.4Re-query CCDS DB by Nucleotide ID:NM_005768Re-query CCDS DB by Protein ID:NP_005759Link to BLAST:NP_005759.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005759.4 487 Q6P1A2-1 487 100% 0 0

Chromosomal Locations for CCDS 8572.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6977146 6977262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6977367 6977525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6977598 6977745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6978341 6978507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6978603 6978689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6979471 6979579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6981004 6981182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6981595 6981632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6981811 6981904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6982676 6982782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6983432 6983539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7018274 7018424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGCGTCCTCAGCGGAGGGGGACGAGGGGACTGTGGTGGCGCTGGCGGGGGTTCTGCAGTCGGGTTTCC
AGGAGCTGAGCCTTAACAAGTTGGCGACGTCCCTGGGCGCGTCAGAACAGGCGCTGCGGCTGATCATCTC
CATCTTCCTGGGTTACCCCTTTGCTTTGTTTTATCGGCATTACCTTTTCTACAAGGAGACCTACCTCATC
CACCTCTTCCATACCTTTACAGGCCTCTCAATTGCTTATTTTAACTTTGGAAACCAGCTCTACCACTCCC
TGCTGTGTATTGTGCTTCAGTTCCTCATCCTTCGACTAATGGGCCGCACCATCACTGCCGTCCTCACTAC
CTTTTGCTTCCAGATGGCCTACCTTCTGGCTGGATACTATTACACTGCCACCGGCAACTACGATATCAAG
TGGACAATGCCACATTGTGTTCTGACTTTGAAGCTGATTGGTTTGGCTGTTGACTACTTTGACGGAGGGA
AAGATCAGAATTCCTTGTCCTCTGAGCAACAGAAATATGCCATACGTGGTGTTCCTTCCCTGCTGGAAGT
TGCTGGTTTCTCCTACTTCTATGGGGCCTTCTTGGTAGGGCCCCAGTTCTCAATGAATCACTACATGAAG
CTGGTGCAGGGAGAGCTGATTGACATACCAGGAAAGATACCAAACAGCATCATTCCTGCTCTCAAGCGCC
TGAGTCTGGGCCTTTTCTACCTAGTGGGCTACACACTGCTCAGCCCCCACATCACAGAAGACTATCTCCT
CACTGAAGACTATGACAACCACCCCTTCTGGTTCCGCTGCATGTACATGCTGATCTGGGGCAAGTTTGTG
CTGTACAAATATGTCACCTGTTGGCTGGTCACAGAAGGAGTATGCATTTTGACGGGCCTGGGCTTCAATG
GCTTTGAAGAAAAGGGCAAGGCAAAGTGGGATGCCTGTGCCAACATGAAGGTGTGGCTCTTTGAAACAAA
CCCCCGCTTCACTGGCACCATTGCCTCATTCAACATCAACACCAACGCCTGGGTGGCCCGCTACATCTTC
AAACGACTCAAGTTCCTTGGAAATAAAGAACTCTCTCAGGGTCTCTCGTTGCTATTCCTGGCCCTCTGGC
ACGGCCTGCACTCAGGATACCTGGTCTGCTTCCAGATGGAATTCCTCATTGTTATTGTGGAAAGACAGGC
TGCCAGGCTCATTCAAGAGAGCCCCACCCTGAGCAAGCTGGCCGCCATTACTGTCCTCCAGCCCTTCTAC
TATTTGGTGCAACAGACCATCCACTGGCTCTTCATGGGTTACTCCATGACTGCCTTCTGCCTCTTCACGT
GGGACAAATGGCTTAAGGTGTATAAATCCATCTATTTCCTTGGCCACATCTTCTTCCTGAGCCTACTATT
CATATTGCCTTATATTCACAAAGCAATGGTGCCAAGGAAAGAGAAGTTAAAGAAGATGGAATAA

Translation (487 aa):
MASSAEGDEGTVVALAGVLQSGFQELSLNKLATSLGASEQALRLIISIFLGYPFALFYRHYLFYKETYLI
HLFHTFTGLSIAYFNFGNQLYHSLLCIVLQFLILRLMGRTITAVLTTFCFQMAYLLAGYYYTATGNYDIK
WTMPHCVLTLKLIGLAVDYFDGGKDQNSLSSEQQKYAIRGVPSLLEVAGFSYFYGAFLVGPQFSMNHYMK
LVQGELIDIPGKIPNSIIPALKRLSLGLFYLVGYTLLSPHITEDYLLTEDYDNHPFWFRCMYMLIWGKFV
LYKYVTCWLVTEGVCILTGLGFNGFEEKGKAKWDACANMKVWLFETNPRFTGTIASFNINTNAWVARYIF
KRLKFLGNKELSQGLSLLFLALWHGLHSGYLVCFQMEFLIVIVERQAARLIQESPTLSKLAAITVLQPFY
YLVQQTIHWLFMGYSMTAFCLFTWDKWLKVYKSIYFLGHIFFLSLLFILPYIHKAMVPRKEKLKKME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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