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Report for CCDS85954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85954.1 Public Homo sapiens 1 TMEM54 24 110 108 CCDS HistoryNCBI Gene:113452Re-query CCDS DB by CCDS ID:85954.1Re-query CCDS DB by GeneID:113452See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85954.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329151.5 ENSP00000328630.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329151.5Link to Ensembl Protein Viewer:ENSP00000328630.5Re-query CCDS DB by Nucleotide ID:ENST00000329151Re-query CCDS DB by Protein ID:ENSP00000328630
Original member Current member NCBI NM_001329725.2 NP_001316654.1 Accepted alive Link to Nucleotide Sequence:NM_001329725.2Link to Protein Sequence:NP_001316654.1Re-query CCDS DB by Nucleotide ID:NM_001329725Re-query CCDS DB by Protein ID:NP_001316654Link to BLAST:NP_001316654.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316654.1 169 Q969K7-3 169 100% 0 0

Chromosomal Locations for CCDS 85954.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32894805 32894879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32895305 32895439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32895555 32895644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32898126 32898319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32901223 32901238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGTGTCTGCGCCTCGGAGGCCTGAGTGTGGGCGACTTCCGGAAGGTGCTGATGAAGACAGGCCTGGTGC
TGGTGGTGCTGGGCCATGTGAGCTTCATCACAGCTGCCCTGTTCCATGGCACAGTGCTGCGCTACGTGGG
CACCCCTCAAGATGCGGTGGCTCTGCAGTACTGCGTGGTCAACATCCTCTCTGTCACTTCCGCCATCGTG
GGCAAGGCACTGCTGGCTGCCTGCACTTTTGGGAGCTCTGAACTACTGGCCCTCGCACCTGACTGTCCCT
TCGACCCCACACGCATTTATAGCTCCAGCCTGTGCCTCTGGGGCATCGCCCTAGTGCTCTGCGTGGCGGA
GAACGTGTTTGCTGTACGCTGTGCTCAGCTCACCCACCAGCTGCTGGAGCTGAGGCCCTGGTGGGGGAAA
AGCAGCCACCACATGATGCGGGAGAACCCAGAGCTGGTGGAGGGCCGTGACCTGCTGAGCTGCACCAGCT
CTGAGCCTCTGACCCTCTGA

Translation (169 aa):
MCLRLGGLSVGDFRKVLMKTGLVLVVLGHVSFITAALFHGTVLRYVGTPQDAVALQYCVVNILSVTSAIV
GKALLAACTFGSSELLALAPDCPFDPTRIYSSSLCLWGIALVLCVAENVFAVRCAQLTHQLLELRPWWGK
SSHHMMRENPELVEGRDLLSCTSSEPLTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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