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Report for CCDS8597.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8597.1 Public Homo sapiens 12 PHC1 24 110 108 CCDS HistoryNCBI Gene:1911Re-query CCDS DB by CCDS ID:8597.1Re-query CCDS DB by GeneID:1911See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8597.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544916.6 ENSP00000437659.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000544916.6Link to Ensembl Protein Viewer:ENSP00000437659.1Re-query CCDS DB by Nucleotide ID:ENST00000544916Re-query CCDS DB by Protein ID:ENSP00000437659
Original member Current member EBI ENST00000543824.5 ENSP00000440674.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543824.5Link to Ensembl Protein Viewer:ENSP00000440674.1Re-query CCDS DB by Nucleotide ID:ENST00000543824Re-query CCDS DB by Protein ID:ENSP00000440674
Original member Current member NCBI NM_004426.3 NP_004417.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004426.3Link to Protein Sequence:NP_004417.2Re-query CCDS DB by Nucleotide ID:NM_004426Re-query CCDS DB by Protein ID:NP_004417Link to BLAST:NP_004417.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004417.2 1004 P78364 1004 100% 0 0

Chromosomal Locations for CCDS 8597.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 8917678 8917791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8919756 8919866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8920985 8921065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8921601 8921750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8922633 8922788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8930435 8930927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8932563 8933350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8933865 8934012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8934267 8934478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8935124 8935238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8936856 8936964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8937176 8937326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8937829 8938060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8939305 8939459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3015 nt):
ATGGAGACTGAGAGCGAGCAGAACTCCAATTCCACCAATGGGAGTTCTAGCTCAGGGGGCAGCTCTCGGC
CCCAGATAGCTCAAATGTCACTTTATGAACGACAAGCAGTGCAGGCTCTGCAAGCACTGCAGCGGCAGCC
CAATGCAGCTCAGTATTTCCACCAGTTCATGCTCCAGCAGCAGCTCAGTAATGCCCAGCTGCATAGCCTG
GCTGCCGTCCAGCAGGCCACAATTGCTGCCAGTCGGCAGGCCAGCTCCCCAAACACCAGCACTACACAGC
AGCAGACTACCACCACCCAGGCCTCGATCAATCTGGCCACCACATCGGCCGCCCAGCTCATCAGCCGATC
CCAGAGTGTGAGCTCTCCCAGTGCTACCACCTTGACCCAATCTGTGCTACTGGGGAACACCACCTCCCCA
CCCCTCAACCAGTCTCAGGCCCAGATGTATCTACGGCCACAGCTGGGAAACCTATTGCAGGTAAACCGAA
CCCTGGGTCGGAATGTGCCTCTAGCCTCCCAACTCATCCTGATGCCTAATGGGGCGGTGGCTGCAGTCCA
GCAGGAGGTGCCATCTGCTCAGTCTCCTGGAGTTCATGCAGATGCAGATCAGGTTCAGAACTTGGCAGTA
AGGAATCAACAGGCCTCAGCTCAAGGACCTCAGATGCAAGGCTCCACTCAGAAGGCCATTCCTCCAGGAG
CCTCCCCTGTCTCTAGCCTCTCCCAGGCCTCTAGCCAGGCCCTAGCGGTGGCACAGGCTTCCTCTGGGGC
CACAAACCAGTCCCTCAACCTTAGTCAAGCTGGTGGAGGCAGTGGGAATAGCATCCCAGGGTCCATGGGT
CCAGGTGGAGGTGGGCAGGCACATGGTGGTTTGGGTCAGTTGCCTTCCTCAGGAATGGGTGGTGGGAGCT
GTCCCAGAAAGGGTACAGGAGTGGTGCAGCCCTTGCCTGCAGCCCAAACAGTGACTGTGAGCCAGGGCAG
CCAGACAGAGGCAGAAAGTGCAGCAGCCAAGAAGGCAGAAGCAGATGGGAGTGGCCAGCAGAATGTGGGC
ATGAACCTGACACGGACAGCCACACCTGCGCCCAGCCAGACACTTATTAGCTCAGCCACCTACACACAGA
TCCAGCCCCATTCACTGATTCAGCAACAGCAACAGATCCACCTCCAGCAGAAACAGGTGGTGATCCAGCA
GCAGATTGCCATCCACCACCAGCAGCAGTTCCAGCACCGGCAGTCCCAGCTCCTTCACACAGCTACACAC
CTCCAGTTGGCGCAGCAGCAGCAGCAGCAACAACAGCAACAGCAGCAACAGCAGCAGCCGCAAGCCACCA
CCCTCACTGCCCCTCAGCCACCACAGGTCCCACCTACTCAGCAGGTCCCACCTTCCCAGTCCCAGCAGCA
AGCCCAAACCCTGGTCGTTCAGCCCATGCTTCAGTCTTCACCCTTGTCTCTTCCACCTGATGCAGCCCCT
AAGCCACCAATTCCCATCCAATCCAAACCACCTGTAGCACCTATCAAGCCGCCTCAGTTAGGGGCCGCTA
AGATGTCAGCTGCCCAGCAACCACCACCCCATATCCCTGTGCAAGTTGTAGGCACTCGACAGCCAGGTAC
AGCCCAGGCACAGGCTTTGGGGTTGGCACAGCTGGCAGCTGCTGTACCTACTTCCCGGGGGATGCCAGGT
ACAGTGCAGTCTGGTCAGGCCCATTTGGCCTCCTCGCCACCTTCATCCCAGGCTCCTGGTGCACTGCAGG
AGTGCCCTCCCACATTGGCCCCTGGGATGACCCTTGCTCCTGTGCAGGGGACAGCACATGTGGTAAAGGG
TGGGGCTACCACCTCCTCACCTGTTGTAGCCCAGGTCCCTGCTGCCTTCTATATGCAGTCTGTGCACTTG
CCGGGTAAACCCCAGACATTGGCTGTCAAACGCAAGGCTGACTCTGAGGAGGAGAGAGATGATGTCTCCA
CATTGGGTTCAATGCTTCCTGCCAAGGCATCTCCAGTAGCAGAAAGCCCAAAAGTCATGGACGAGAAGAG
CAGTCTTGGAGAAAAAGCTGAATCAGTGGCTAATGTGAATGCTAATACTCCAAGCAGTGAACTAGTAGCC
TTGACCCCCGCCCCTTCAGTACCGCCTCCTACACTAGCCATGGTGTCTAGACAAATGGGTGACTCAAAAC
CCCCACAGGCCATCGTGAAGCCCCAGATTCTCACCCACATCATTGAAGGCTTTGTTATCCAGGAAGGAGC
AGAACCTTTCCCGGTGGGTTGTTCTCAGTTACTGAAGGAGTCTGAGAAGCCACTACAGACTGGCCTTCCG
ACAGGGCTGACTGAGAATCAGTCAGGTGGCCCTTTGGGAGTGGACAGCCCATCTGCTGAGTTAGATAAGA
AGGCGAATCTCCTGAAGTGCGAGTACTGTGGGAAGTACGCCCCCGCAGAGCAGTTTCGTGGCTCTAAGAG
GTTCTGCTCCATGACTTGCGCTAAGAGGTACAATGTGAGCTGTAGCCATCAGTTCCGGCTGAAGAGGAAA
AAAATGAAAGAGTTTCAAGAAGCCAACTATGCTCGCGTTCGCAGGCGTGGACCCCGCCGCAGCTCCTCTG
ACATTGCCCGTGCCAAGATTCAGGGCAAGTGCCACCGGGGTCAAGAAGACTCTAGCCGGGGTTCAGATAA
TTCCAGTTATGATGAAGCACTCTCTCCAACATCTCCTGGGCCTTTATCAGTAAGAGCTGGGCATGGAGAA
CGTGACCTGGGGAATCCCAATACAGCTCCACCTACACCGGAATTACATGGCATCAACCCTGTGTTCCTGT
CCAGTAATCCCAGCCGTTGGAGTGTAGAGGAGGTGTACGAGTTTATTGCTTCTCTCCAAGGCTGCCAAGA
GATTGCAGAGGAATTTCGCTCACAGGAGATTGATGGACAGGCCCTTTTATTACTTAAAGAAGAACATCTT
ATGAGTGCCATGAACATCAAGCTGGGCCCTGCCCTCAAGATCTGCGCCAAGATAAATGTCCTCAAGGAGA
CCTAA

Translation (1004 aa):
METESEQNSNSTNGSSSSGGSSRPQIAQMSLYERQAVQALQALQRQPNAAQYFHQFMLQQQLSNAQLHSL
AAVQQATIAASRQASSPNTSTTQQQTTTTQASINLATTSAAQLISRSQSVSSPSATTLTQSVLLGNTTSP
PLNQSQAQMYLRPQLGNLLQVNRTLGRNVPLASQLILMPNGAVAAVQQEVPSAQSPGVHADADQVQNLAV
RNQQASAQGPQMQGSTQKAIPPGASPVSSLSQASSQALAVAQASSGATNQSLNLSQAGGGSGNSIPGSMG
PGGGGQAHGGLGQLPSSGMGGGSCPRKGTGVVQPLPAAQTVTVSQGSQTEAESAAAKKAEADGSGQQNVG
MNLTRTATPAPSQTLISSATYTQIQPHSLIQQQQQIHLQQKQVVIQQQIAIHHQQQFQHRQSQLLHTATH
LQLAQQQQQQQQQQQQQQQPQATTLTAPQPPQVPPTQQVPPSQSQQQAQTLVVQPMLQSSPLSLPPDAAP
KPPIPIQSKPPVAPIKPPQLGAAKMSAAQQPPPHIPVQVVGTRQPGTAQAQALGLAQLAAAVPTSRGMPG
TVQSGQAHLASSPPSSQAPGALQECPPTLAPGMTLAPVQGTAHVVKGGATTSSPVVAQVPAAFYMQSVHL
PGKPQTLAVKRKADSEEERDDVSTLGSMLPAKASPVAESPKVMDEKSSLGEKAESVANVNANTPSSELVA
LTPAPSVPPPTLAMVSRQMGDSKPPQAIVKPQILTHIIEGFVIQEGAEPFPVGCSQLLKESEKPLQTGLP
TGLTENQSGGPLGVDSPSAELDKKANLLKCEYCGKYAPAEQFRGSKRFCSMTCAKRYNVSCSHQFRLKRK
KMKEFQEANYARVRRRGPRRSSSDIARAKIQGKCHRGQEDSSRGSDNSSYDEALSPTSPGPLSVRAGHGE
RDLGNPNTAPPTPELHGINPVFLSSNPSRWSVEEVYEFIASLQGCQEIAEEFRSQEIDGQALLLLKEEHL
MSAMNIKLGPALKICAKINVLKET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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