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Report for CCDS86.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86.1 Public Homo sapiens 1 THAP3 24 110 108 CCDS HistoryNCBI Gene:90326Re-query CCDS DB by CCDS ID:86.1Re-query CCDS DB by GeneID:90326See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377627.7 ENSP00000366854.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377627.7Link to Ensembl Protein Viewer:ENSP00000366854.3Re-query CCDS DB by Nucleotide ID:ENST00000377627Re-query CCDS DB by Protein ID:ENSP00000366854
Original member Current member NCBI NM_138350.4 NP_612359.2 Accepted alive Link to Nucleotide Sequence:NM_138350.4Link to Protein Sequence:NP_612359.2Re-query CCDS DB by Nucleotide ID:NM_138350Re-query CCDS DB by Protein ID:NP_612359Link to BLAST:NP_612359.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612359.2 175 Q8WTV1-4 175 100% 0 0

Chromosomal Locations for CCDS 86.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6625219 6625292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6628499 6628691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6630288 6630353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6632370 6632495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6634020 6634088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGCCGAAGTCGTGCGCGGCCCGGCAGTGCTGCAACCGCTACAGCAGCCGCAGGAAGCAGCTCACCTTCC
ACCGGTTTCCGTTCAGCCGCCCGGAGCTGCTGAAGGAATGGGTGCTGAACATCGGCCGGGGCAACTTCAA
GCCCAAGCAGCACACGGTCATCTGCTCCGAGCACTTCCGGCCAGAGTGCTTCAGCGCCTTTGGAAACCGC
AAGAACCTAAAGCACAATGCCGTGCCCACGGTGTTCGCCTTTCAGGACCCCACACAGCAGGTGAGGGAGA
ACACAGACCCTGCCAGTGAGAGAGGAAATGCCAGCTCTTCTCAGAAAGAAAAGACTTCACCCTGCCGTTC
CCAGGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGAGAAACATGGACACTGCACTTGAAGAG
CTTCAGTTGCCCCCAAATGCCGAAGGCCACGTAAAACAGGCAATGTTGTTTAATGTAGAAAATGGAACCC
CAGCTTCACGTGAAGCCTTGTGGTTGAGTGAGGAGTGA

Translation (175 aa):
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFRPECFSAFGNR
KNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQVLPEAGAGEDSPGRNMDTALEE
LQLPPNAEGHVKQAMLFNVENGTPASREALWLSEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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