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Report for CCDS86042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86042.1 Public Homo sapiens 1 RO60 24 110 108 CCDS HistoryNCBI Gene:6738Re-query CCDS DB by CCDS ID:86042.1Re-query CCDS DB by GeneID:6738See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86042.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432079.5 ENSP00000472298.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432079.5Link to Ensembl Protein Viewer:ENSP00000472298.1Re-query CCDS DB by Nucleotide ID:ENST00000432079Re-query CCDS DB by Protein ID:ENSP00000472298
Original member Current member NCBI NM_001331020.2 NP_001317949.1 Accepted alive Link to Nucleotide Sequence:NM_001331020.2Link to Protein Sequence:NP_001317949.1Re-query CCDS DB by Nucleotide ID:NM_001331020Re-query CCDS DB by Protein ID:NP_001317949Link to BLAST:NP_001317949.1

Chromosomal Locations for CCDS 86042.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 193076525 193076647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193076913 193077050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193081364 193081480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193082186 193082299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193082562 193082708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193084579 193084731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGCCGCTTACTGCATTACTAAGGAATCTAGGAAAGATGACTGCTAATTCAGTACTTGAACCAGGAAATT
CAGAAGTATCTTTAGTATGTGAAAAACTGTGTAATGAAAAACTATTAAAAAAGGCTCGTATACATCCATT
TCATATTTTGATCGCATTAGAAACTTACAAGACAGGTCATGGTCTCAGAGGGAAACTGAAGTGGCGCCCT
GATGAAGAAATTTTGAAAGCATTGGATGCTGCTTTTTATAAAACATTTAAGACAGTTGAACCAACTGGAA
AACGTTTCTTACTAGCTGTTGATGTCAGTGCTTCTATGAACCAAAGAGTTTTGGGTAGTATACTCAACGC
TAGTACAGTTGCTGCAGCAATGTGCATGGTTGTCACACGAACAGAAAAAGATTCTTATGTAGTTGCTTTT
TCCGATGAAATGGTACCATGTCCAGTGACTACAGATATGACCTTACAACAGGTTTTAATGGCTATGAGTC
AGATCCCAGCAGGTGGAACTGATTGCTCTCTTCCAATGATCTGGGCTCAGAAGACAAACACACCTGCTGA
TGTCTTCATTGTATTCACTGATAATGAGACCTTTGCTGGAGGTGTCCATCCTGCTATTGCTCTGAGGGAG
TATCGAAAGAAAATGGATATTCCAGCTAAATTGATTGTTTGTGGAATGACATCAAATGGTTTCACCATTG
CAGACCCAGATGATAGAGGCATGTTGGATATGTGCGGCTTTGATACTGGAGCTCTGGATGTAATTCGAAA
TTTCACATTAGATATGATTTAA

Translation (263 aa):
MPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRP
DEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAF
SDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALRE
YRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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