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Report for CCDS86081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86081.1 Public Homo sapiens 10 CCDC7 24 110 108 CCDS HistoryNCBI Gene:79741Re-query CCDS DB by CCDS ID:86081.1Re-query CCDS DB by GeneID:79741See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 86081.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000639629.2 ENSP00000491655.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000639629.2Link to Ensembl Protein Viewer:ENSP00000491655.1Re-query CCDS DB by Nucleotide ID:ENST00000639629Re-query CCDS DB by Protein ID:ENSP00000491655
Original member Current member NCBI NM_001321115.2 NP_001308044.1 Accepted alive Link to Nucleotide Sequence:NM_001321115.2Link to Protein Sequence:NP_001308044.1Re-query CCDS DB by Nucleotide ID:NM_001321115Re-query CCDS DB by Protein ID:NP_001308044Link to BLAST:NP_001308044.1
Original member Current member NCBI NM_001395015.1 NP_001381944.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395015.1Link to Protein Sequence:NP_001381944.1Re-query CCDS DB by Nucleotide ID:NM_001395015Re-query CCDS DB by Protein ID:NP_001381944Link to BLAST:NP_001381944.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308044.1 1385 Q96M83-1 1385 100% 0 0
NP_001381944.1 1385 Q96M83-1 1385 100% 0 0

Chromosomal Locations for CCDS 86081.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 32451643 32451921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32453344 32453436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32456251 32456334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32462683 32462703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32463017 32463049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32471064 32471230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32472481 32472542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32473967 32474023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32491922 32491997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32517945 32517975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32518416 32518505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32543300 32543385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32544247 32544301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32565558 32565620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32567670 32567891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32571859 32571893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32583034 32583307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32584232 32584304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32634254 32634364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32635057 32635158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32664054 32664161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32685970 32686080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32689053 32689163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32694879 32694992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32711620 32711730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32726734 32726832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32728887 32728997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32729332 32729457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32778977 32779084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32805015 32805098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32814370 32814453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32824518 32824604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32834815 32834898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32845243 32845326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32845543 32845626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32845876 32845959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32846376 32846459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32847833 32847916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32848596 32848718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32851807 32851932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32854400 32854489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32876347 32876393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4158 nt):
ATGAAACCAGTAAAGCATCTGTTGACCACCAGTAACAAATCGGCAAATGTTCCAGCATTAACTACTAAAA
AAGGACTACATAATTTACCATTATCACCTGAGCTAAAGGAAAAACATAATGCAAAATTAATTCATGATAA
AATTGAACCAATGGTCCTAAGATCTCCACCAACAGGAGAATCCATTTTACGGTATGCTTTGCCCATTCCA
TCGAGTAAGACAAAGAACTTACTACCAGAAGATGAAATGATCGGAAAAATTATCAAACATCTGAAGATGG
TTGTTTCCACTTTGGAAGAAACCTATGGACATTGCGATCAGAATGGAGAAGAACCATTTGTAAAGCATGA
ACATGAAGAATTATCTTTATCTGTTGGGGATGATATGAATTCATTCTTGACATATTGTTCGCAATTTGCA
GCTCAGCTAGAAGAAGCACTTAAAGAAGAACAAAATATTTTGGAATCTCTTTTTAAGTGGTTTCAGTGGC
AGGTCAATCAGATGGAAGAAATAAGTAAAGATCAAACTCTTTTACAAGCAGAGCCTCCAAAACCTGACAA
AACAGTCATTTTAAATATTGCAGAAATAGTAAGGCTTGTACAAAGATTTGAAGAACTGAAGAATCGCCTT
AAACAGAGGTCTAAATCCTCCGTGAAAGTCATGTTGTCTAAAACTATGGATAAAGAAAATCGACCAGAAG
CAGTGAAAAGTTGTGAAGCTCTGGCACAGAAAATTGAAGAATTCTTAGAAGCCCACTCAACTGATGAATT
TAAAGATGTTTCTGCAACAGAACCACAAACTGCTCATTCAATGACTAATCGATTTAATGCCATGTTGAAA
GTATTTGAAAACCAGGCAAATATGTTGGAGAGAGCTGTAAATGATCAAGTTTTGTTAGATGCTGAATACA
AACAGATGCAGTGTGATTTTCAGTTGTTATCAGAAGAGAAGTTGGTGCTGGAAAATGAACTACAAAAGTT
GAAGGACAAAGAGAAAACTAAGCCTACAAATAATCGAACAAAGAAAGCTGTGAAAACAGTGAAGAAAAAA
GACAAAGGAAAATCTGAGGATTCAGAAAAGAAGATGTCTCCAGAAAAAGAGTTTAAAATAAAAGAAGATT
TGGATCAAGTACAGAAAGTAGCACGTCTGGAAATTGAGAACAAAGTCCTTCAGGAGCAATTGAAACAGGC
TTTACAGGAAGCTGAAAAAGCTAAGCATCAACTTAACTATTTCCTAAATCAAGAGAAGTTACTTAAAAGT
GAGGGGAAAACTGAGACAACAATGCAAGTGGGTAATAGTCAAACAAAAGTTAAAGGTGAAGATTCAAAAA
ATATACCATTGGAGAAAGAAACAAGAAAATCACTGGTTTCAGATTCAGGTGGACAAAGGACAAGTGATAA
AATCCAAGAATATCCACAGATCACTGCCCAAAGCGGAAGACTGATTGAAAAGAGCTCAGAGAAGAAACGA
TCTAGCCCTGCTATTTCAGATCTTTCACAGATCCTTAAGTCTCAAGATGAATCAGCATTTTTAGAGAGTT
CAAATGAAGTTTCAGTTGCTGAAAACCAATCCTATAAATCTCCATCAGAGACCCATGATAAATCACTTAC
AACAGTATCATCCAGCAAAGAAGTTCAAGATTCACTGTCTGTTGGAACATTGGCTCAAAAAAACGAAACA
GTGATATCACCATTCATTTTACCTCCTGTTCTTACAGAAAGTAAAAAGGCTGATGTTTCAGAAGAACAAT
TACAAAAGATGACTGAAGAACAAACTTACCAAGCAGCAGAAAAATCTCAAGCTGACAGTGAAGTTCCAGA
TGAAAATCTTATGGTTGAAAATAAAGATTCAGTAACAAAAGTCCAAATAGAACAAATGAAACAAAGAACT
TCTAGTATGGAAAGACATGAGGAGACTCTTACAACCCCACAATTGCCTGAGGACATGGTTTTAGTTTCAA
GAATCCAATCTGAAACTAAAAATCTTAAAGCTACCAGAAATGAGAGTTTTCATTCTCATAATGATGTACC
AGAAGAAAATCTTATGCTTGAACAAGACACAAAGTCAAAAACGGAAGTAGAAGTAAAGAAACAAAAATCT
TTCCAAGATAATCAACTCAGTACTCATAATGAAGTACCAAATGAAAGGCTTGTAGTTGAGCATCAAGAAT
CATTGTCAAAAACCAAATTACAAATAAAGAAACAAGAAACTTCTACAGAGCAACCACTCACCACTCCTGA
TAAAGAACCAAATGAAAATCTTATACTTAGGCATCAAGACTCAATGTCAAAATCAGAAATGCAAGTGAAG
GAACAAAGAACTCTCAAAGGGCAAAGAATTATTACTCATGATGAAGAACCAGGCAAAAATCTTGTGCTTG
AACATCAAGATTCAGTGTCAAAACTGGAAATGCAAATTGAAAAAACCAAAAAACTTCCTAGAGAGAAAAG
ACATAGTACTCATGATGAAGAATCAGGTGAAAATCCTATGCTTAAACATCAAGATTCAGTGTCAAAAATC
CAAGTGCAATTAGAGATTCAAGAAACTTCTGAAGGAGAAGGACGTAGCATACCAGATAAAAATTCTATGT
TTGTTCATCAAGATTCAGTGTCAAAACTCCAAATGCAAGAAAAGAAAAAAATAACTCCTGGAAGGGAAAG
GCGTAATACTCGTATTGTAGTACCAAATGAAAATGTGATTTCTGTTCATCAAGATTCAAAGTCAAAACTC
CAAATGCAAGAAAAGAAACAAATAAATTCTGGAGTGGAAAGACACAAGACGTTTCCTTTAGAAATCAAAA
AAAAGGATATATCACTTGAACATCTGTTGCCTGAGGAGAAAGTTTTATTATCAAGAAGCGAATCTCAAAC
GAAGAAACTTCAAGCTAAAGTAACTTCAAGAAAAATTAAAAATGAAGCAGCCTCAGAACTTCCAGATACA
GCAGAAAATCTTCCAGCAATGTACCCGTCAATTAGCGACCTAATAATTCAATTTGATTTAAACAAAGTGG
TCGAGACTGATATAGAAAGCTTGAGAGGTGCTTTGGGAAGACGCTTATTAAATGATGAATTCAAGACACA
GTCAAAGAGTTTCCCTGGGCCTGATATAGAACAATTGACAGATGCATTTGGAAGAGATATACTAAAGGAT
GAATTCAAGACACGATCAAAGAGTCTCCCTGAGACTGATGAACGATTGCATAGTACAACTGAGAGAGGTA
CAATAAATGATGCAATTAAGACGCAGTTAAAGAGAAAGAGTTACCCTGAGACTGTCTTAAAACACTTGAA
AGGTGTTAATGGAAAAGATATAATAAAGCATCTAATCAACATACAGTCAAAGAGTCATGGAGAGACTGAT
AAGGAACACTTAGCAGATGATACTGGAAGAGGTATAATAAAGGGATCAATCAATGCACAACTAAAGGGTC
ACCAAAAGACTGATAAGAACTTCTTTGCCTATGCTACTGGAAGAGGTCTAATGAAGGAGTCAACCACGAC
ACAATTAAAAAGTCACCCAGAGACTGATAAGGAATTCTTGGCAGATGCTATTGGAAGAGGTATAATAATA
GGGCCAATCACTACACAACTGAAGAGTCACCGAGAGACTGATAAAGAACTCTTAAAAGATGCTATTGGAA
GAGATATAATAAAGGGACCAATCAGTGCACAATTAAAGAGTCACCAGGAGACTGATGTAGAACCCTTGAC
AAATGCCATTGGTTCAAGTAAAACAATTGGTGAGATAAAGACACAACTAAGGACTCACTATGATGTGAAC
TTATTTAAAAACAAAGATATGTCCGTACAACGTCAAGAAGGTATCTTTACTAGGAGCATTACACCAAGTA
AATTCCCAACAAAAGTGATCAATTTATCACCCTTTGAAAATAAAGAGGAAACTTATGAGTACTCTTCACC
CTATGTGACTGCACCTTCAAAAGCAATTTATAGAACATATAGGGCTGGTCCAAGCTTTTCTAAAGACATC
CACCTTCCTTTACTGAATCAACTCCCTTCAGGGCATTCGAAAGTTGTTACCTTAAGCCAAAAAACTATTG
AATTTACTCTGCCTACTGTGACCAATACAGTTGGAAAACCTACCTATAAAGTGTTACATGCTGCTGCCCG
AAAATCTGTACCACACCCATACTTTTGA

Translation (1385 aa):
MKPVKHLLTTSNKSANVPALTTKKGLHNLPLSPELKEKHNAKLIHDKIEPMVLRSPPTGESILRYALPIP
SSKTKNLLPEDEMIGKIIKHLKMVVSTLEETYGHCDQNGEEPFVKHEHEELSLSVGDDMNSFLTYCSQFA
AQLEEALKEEQNILESLFKWFQWQVNQMEEISKDQTLLQAEPPKPDKTVILNIAEIVRLVQRFEELKNRL
KQRSKSSVKVMLSKTMDKENRPEAVKSCEALAQKIEEFLEAHSTDEFKDVSATEPQTAHSMTNRFNAMLK
VFENQANMLERAVNDQVLLDAEYKQMQCDFQLLSEEKLVLENELQKLKDKEKTKPTNNRTKKAVKTVKKK
DKGKSEDSEKKMSPEKEFKIKEDLDQVQKVARLEIENKVLQEQLKQALQEAEKAKHQLNYFLNQEKLLKS
EGKTETTMQVGNSQTKVKGEDSKNIPLEKETRKSLVSDSGGQRTSDKIQEYPQITAQSGRLIEKSSEKKR
SSPAISDLSQILKSQDESAFLESSNEVSVAENQSYKSPSETHDKSLTTVSSSKEVQDSLSVGTLAQKNET
VISPFILPPVLTESKKADVSEEQLQKMTEEQTYQAAEKSQADSEVPDENLMVENKDSVTKVQIEQMKQRT
SSMERHEETLTTPQLPEDMVLVSRIQSETKNLKATRNESFHSHNDVPEENLMLEQDTKSKTEVEVKKQKS
FQDNQLSTHNEVPNERLVVEHQESLSKTKLQIKKQETSTEQPLTTPDKEPNENLILRHQDSMSKSEMQVK
EQRTLKGQRIITHDEEPGKNLVLEHQDSVSKLEMQIEKTKKLPREKRHSTHDEESGENPMLKHQDSVSKI
QVQLEIQETSEGEGRSIPDKNSMFVHQDSVSKLQMQEKKKITPGRERRNTRIVVPNENVISVHQDSKSKL
QMQEKKQINSGVERHKTFPLEIKKKDISLEHLLPEEKVLLSRSESQTKKLQAKVTSRKIKNEAASELPDT
AENLPAMYPSISDLIIQFDLNKVVETDIESLRGALGRRLLNDEFKTQSKSFPGPDIEQLTDAFGRDILKD
EFKTRSKSLPETDERLHSTTERGTINDAIKTQLKRKSYPETVLKHLKGVNGKDIIKHLINIQSKSHGETD
KEHLADDTGRGIIKGSINAQLKGHQKTDKNFFAYATGRGLMKESTTTQLKSHPETDKEFLADAIGRGIII
GPITTQLKSHRETDKELLKDAIGRDIIKGPISAQLKSHQETDVEPLTNAIGSSKTIGEIKTQLRTHYDVN
LFKNKDMSVQRQEGIFTRSITPSKFPTKVINLSPFENKEETYEYSSPYVTAPSKAIYRTYRAGPSFSKDI
HLPLLNQLPSGHSKVVTLSQKTIEFTLPTVTNTVGKPTYKVLHAAARKSVPHPYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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