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Report for CCDS8619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8619.1 Public Homo sapiens 12 TMEM52B 24 110 108 CCDS HistoryNCBI Gene:120939Re-query CCDS DB by CCDS ID:8619.1Re-query CCDS DB by GeneID:120939See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8619.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298530.7 ENSP00000298530.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000298530.7Link to Ensembl Protein Viewer:ENSP00000298530.3Re-query CCDS DB by Nucleotide ID:ENST00000298530Re-query CCDS DB by Protein ID:ENSP00000298530
Original member Current member NCBI NM_001384898.1 NP_001371827.1 Accepted alive Link to Nucleotide Sequence:NM_001384898.1Link to Protein Sequence:NP_001371827.1Re-query CCDS DB by Nucleotide ID:NM_001384898Re-query CCDS DB by Protein ID:NP_001371827Link to BLAST:NP_001371827.1
Original member Current member NCBI NM_153022.4 NP_694567.1 Accepted alive Link to Nucleotide Sequence:NM_153022.4Link to Protein Sequence:NP_694567.1Re-query CCDS DB by Nucleotide ID:NM_153022Re-query CCDS DB by Protein ID:NP_694567Link to BLAST:NP_694567.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371827.1 163 Q4KMG9-2 163 100% 0 0
NP_694567.1 163 Q4KMG9-2 163 100% 0 0

Chromosomal Locations for CCDS 8619.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 10179591 10179628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10185330 10185368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10186420 10186589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10189896 10190140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGTCGTGGCGGCCTCAGCCCTGCTGTATTTCATCCTGTTGCCTGACCACAGACTGGGTACATCTCTGGT
ATATATGGTTGCTAGTGGTAATTGGCGCGCTGCTTCTCCTGTGTGGCCTGACGTCCCTGTGCTTCCGCTG
CTGCTGTCTGAGCCGCCAGCAAAATGGGGAAGATGGGGGCCCACCACCCTGTGAAGTGACCGTCATTGCT
TTCGATCACGACAGCACTCTCCAGAGCACTATCACATCTCTGCAGTCGGTGTTTGGCCCTGCAGCTCGGA
GGATCCTGGCTGTGGCTCACTCCCACAGCTCCCTGGGCCAGCTGCCCTCCTCTTTGGACACCCTCCCAGG
GTATGAAGAAGCTCTTCACATGAGTCGCTTCACAGTAGCCATGTGCGGGCAGAAAGCACCTGATCTACCC
CCAGTACCTGAAGAAAAGCAGCTGCCTCCAACAGAGAAGGAGTCGACTCGAATAGTTGACTCTTGGAACT
GA

Translation (163 aa):
MSWRPQPCCISSCCLTTDWVHLWYIWLLVVIGALLLLCGLTSLCFRCCCLSRQQNGEDGGPPPCEVTVIA
FDHDSTLQSTITSLQSVFGPAARRILAVAHSHSSLGQLPSSLDTLPGYEEALHMSRFTVAMCGQKAPDLP
PVPEEKQLPPTEKESTRIVDSWN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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