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Report for CCDS8620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8620.1 Public Homo sapiens 12 GABARAPL1 24 110 108 CCDS HistoryNCBI Gene:23710Re-query CCDS DB by CCDS ID:8620.1Re-query CCDS DB by GeneID:23710See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8620.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266458.10 ENSP00000266458.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266458.10Link to Ensembl Protein Viewer:ENSP00000266458.5Re-query CCDS DB by Nucleotide ID:ENST00000266458Re-query CCDS DB by Protein ID:ENSP00000266458
Original member Current member EBI ENST00000545887.1 ENSP00000444186.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545887.1Link to Ensembl Protein Viewer:ENSP00000444186.1Re-query CCDS DB by Nucleotide ID:ENST00000545887Re-query CCDS DB by Protein ID:ENSP00000444186
Original member Current member NCBI NM_031412.4 NP_113600.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031412.4Link to Protein Sequence:NP_113600.1Re-query CCDS DB by Nucleotide ID:NM_031412Re-query CCDS DB by Protein ID:NP_113600Link to BLAST:NP_113600.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113600.1 117 Q9H0R8-1 117 100% 0 0

Chromosomal Locations for CCDS 8620.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 10213130 10213219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10218063 10218141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10220440 10220558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10221787 10221852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGAAGTTCCAGTACAAGGAGGACCATCCCTTTGAGTATCGGAAAAAGGAAGGAGAAAAGATCCGGAAGA
AATATCCGGACAGGGTCCCCGTGATTGTAGAGAAGGCTCCAAAAGCCAGGGTGCCTGATCTGGACAAGAG
GAAGTACCTAGTGCCCTCTGACCTTACTGTTGGCCAGTTCTACTTCTTAATCCGGAAGAGAATCCACCTG
AGACCTGAGGACGCCTTATTCTTCTTTGTCAACAACACCATCCCTCCCACCAGTGCTACCATGGGCCAAC
TGTATGAGGACAATCATGAGGAAGACTATTTTCTGTATGTGGCCTACAGTGATGAGAGTGTCTATGGGAA
ATGA

Translation (117 aa):
MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHL
RPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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