NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS86488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86488.1 Public Homo sapiens 16 LMF1 24 110 108 CCDS HistoryNCBI Gene:64788Re-query CCDS DB by CCDS ID:86488.1Re-query CCDS DB by GeneID:64788See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86488.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000568897.5 ENSP00000458135.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568897.5Link to Ensembl Protein Viewer:ENSP00000458135.1Re-query CCDS DB by Nucleotide ID:ENST00000568897Re-query CCDS DB by Protein ID:ENSP00000458135
Original member Current member NCBI NM_001352017.2 NP_001338946.1 Accepted alive Link to Nucleotide Sequence:NM_001352017.2Link to Protein Sequence:NP_001338946.1Re-query CCDS DB by Nucleotide ID:NM_001352017Re-query CCDS DB by Protein ID:NP_001338946Link to BLAST:NP_001338946.1
Original member Current member NCBI NM_001352021.2 NP_001338950.1 Accepted alive Link to Nucleotide Sequence:NM_001352021.2Link to Protein Sequence:NP_001338950.1Re-query CCDS DB by Nucleotide ID:NM_001352021Re-query CCDS DB by Protein ID:NP_001338950Link to BLAST:NP_001338950.1

Chromosomal Locations for CCDS 86488.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 854532 854706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 868944 869056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 869883 870066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 870729 870882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 871161 871341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 879570 879737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 893007 893072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 910931 910942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGCTTGGAGCAGGCCTGATCAAGATCCGGGGGGACCGGTGCTGGCGAGACCTCACCTGCATGGACTTCC
ACTATGAGACCCAGCCGATGCCCAATCCTGTGGCGTACTACCTGCACCACTCACCCTGGTGGTTCCATCG
CTTCGAGACGCTCAGCAACCACTTCATCGAGCTCCTGGTGCCCTTCTTCCTCTTCCTCGGCCGGCGGGCG
TGCATCATCCACGGGGTGCTGCAGATCCTGTTCCAGGCCGTCCTCATCGTCAGCGGGAACCTCAGCTTCC
TGAACTGGCTGACTATGGTGCCCAGCCTGGCCTGCTTTGATGACGCCACCCTGGGATTCTTGTTCCCCTC
TGGGCCAGGCAGCCTGAAGGACCGAGTTCTGCAGATGCAGAGGGACATCCGAGGGGCCCGGCCCGAGCCC
AGATTCGGCTCCGTGGTGCGGCGTGCAGCCAACGTCTCGCTGGGCGTCCTGCTGGCCTGGCTCAGCGTGC
CCGTGGTCCTCAACTTGCTGAGCTCCAGGCAGGTCATGAACACCCACTTCAACTCTCTTCACATCGTCAA
CACTTACGGGGCCTTCGGAAGCATCACCAAGGAGCGGGCGGAGGTGATCCTGCAGGGCACAGCCAGCTCC
AACGCCAGCGCCCCCGATGCCATGTGGGAGGACTACGAGTTCAAGTGCAAGCCAGGTGACCCCAGCAGAC
GGCCCTGCCTCATCTCCCCGTACCACTACCGCCTGGACTGGCTGATGTGGTTCGCGGCCTTCCAGACCTA
CGAGCACAACGACTGGATCATCCACCTGGCTGGCAAGCTCCTGGCCAGCGACGCCGAGGCCTTGTCCCTG
CTGGCACACAACCCCTTCGCGGGCAGGCCCCCGCCCAGGTGGGTCCGAGGAGAGCACTACAGGTACAAGT
TCAGCCGTCCTGGGGGCAGGCACGCCGCCGAGGGCAAGTGGTGGGTGCGGAAGAGGATCGGAGCCTACTT
CCCTCCGCTCAGCCTGGAGGAGCTGAGGCCCTACTTCAGGGACCGTGGGTGGCCTCTGCCCGGGCCCCTC
TAG

Translation (350 aa):
MLGAGLIKIRGDRCWRDLTCMDFHYETQPMPNPVAYYLHHSPWWFHRFETLSNHFIELLVPFFLFLGRRA
CIIHGVLQILFQAVLIVSGNLSFLNWLTMVPSLACFDDATLGFLFPSGPGSLKDRVLQMQRDIRGARPEP
RFGSVVRRAANVSLGVLLAWLSVPVVLNLLSSRQVMNTHFNSLHIVNTYGAFGSITKERAEVILQGTASS
NASAPDAMWEDYEFKCKPGDPSRRPCLISPYHYRLDWLMWFAAFQTYEHNDWIIHLAGKLLASDAEALSL
LAHNPFAGRPPPRWVRGEHYRYKFSRPGGRHAAEGKWWVRKRIGAYFPPLSLEELRPYFRDRGWPLPGPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH