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Report for CCDS86492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86492.1 Public Homo sapiens 16 PTX4 24 110 108 CCDS HistoryNCBI Gene:390667Re-query CCDS DB by CCDS ID:86492.1Re-query CCDS DB by GeneID:390667See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86492.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447419.7 ENSP00000445277.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000447419.7Link to Ensembl Protein Viewer:ENSP00000445277.2Re-query CCDS DB by Nucleotide ID:ENST00000447419Re-query CCDS DB by Protein ID:ENSP00000445277
Original member Current member NCBI NM_001328608.2 NP_001315537.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001328608.2Link to Protein Sequence:NP_001315537.1Re-query CCDS DB by Nucleotide ID:NM_001328608Re-query CCDS DB by Protein ID:NP_001315537Link to BLAST:NP_001315537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001315537.1 478 Q96A99-1 478 100% 0 0

Chromosomal Locations for CCDS 86492.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1485939 1486579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1487316 1487970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1488769 1488909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGGTTGCTCGTGGAGGAAGACCTTGTCTTTCTTCCTTGTTTTTGTGCCTATATATCTACATGGGGCTT
CATCGCAGGAAGCCGCCCCAGTGGGGCCCAGGAAACCGTTTTTCGAGAGGCTCCGTAGGCTGGAGGAACA
GTTCCGGAGATTCCAGGAGGTGACCTGGACACACCTGCAGAACATCGCCAGCAACTACAACGTGTCCTAC
AACGTTGACGTCCGGTTCCGGAGCCTGGCGGAAGAGAGCCAGGCTGTGGCTCAGGCAGTCAACCGGTCAC
AGGCCTCGGTGCAGGGGGAGCTGGCGCAGCTCAAGGCCTGGGTGAGGAAGCTGCAGCGCCGAGGCCGGAA
AGTAGACACGCGGCTGCGGGCCTTGGACCTCACCCTGGGCGAGAGGAGCCAGCAGCGGGCCCGGGAAAGG
AAGGCACACAAGGCCCAGAGGGACGCCCTGCAGGACTCACTGGCACGCCTGGAGGGCCTCGTCCACAGCC
AGGGCGCCAGGCTGGCTGCTCTGGAGGGGCGGCTGCCCGTGGCCCACCCTGGCACTGCAGCCCTCGGGCC
GGCCCTGGTCCCAACCCCAACCCAGCCTGAGGAGCTGGGCCCGACCTCCCTGAAGCTTCAGAGGGACAGG
CAGGAGCTCCGAGCTGCCTCTGAGCACAGGGGCCCCCCACAGGACTCCTCGGCCCCTCTCCAAGGGAGGC
GGGAGCCTCCAGCCTCAGGCAGCCATCGGGTACTCAGTGGGACTGCCCCAAAAGACCCTCGGCAGCAGGC
ATGGTCCCCCCAGGTGCCAGGAGAGATTTGCGGCGTGGGCCCCACCCTCGTTTTCCCAAACGCCTCCACC
AGGAACGTGGTCTTCCTCAGCCCTGGTTTCGTCACTGCCCTGCGAGCCCTGTCCTTCTGCAGCTGGGTCC
GCACGGCCTCCGGCCGCCTGGGCACCCTCCTGTCCTACGCCACCGAGGACAATGACAACAAGCTGGTGCT
GCACGGCCGAGACTCCCTGCTGCCCGGATCCATCCACTTCGTGATCGGGGACCCGGCCTTCAGGGAGCTG
CCCTTGCAGCTGCTGCTGGACGGCCAGTGGCACCACATCTGTGTCATCTGGACGTCCACCCAGGGCAGGT
ACTGGCTCCACGTGGATCGCAGGCTGGTGGCCACCGGCTCCCGCTTCAGGGAGGGCTATGAGATCCCCCC
CGGAGGGTCCCTCGTGCTGGGCCAGGAACAAGACAGCGTGGGGGGCGGATTCGACAGCTCCGAGGCCTTC
GTGGGGAGCATGTCTGGCTTGGCTATCTGGGATCGGGCGCTGGTTCCCGGGGAAGTTGCAAACCTTGCCA
TCGGGAAAGAGTTCCCGACAGGTGCCATCCTGACGCTGGCCAATGCTGCACTAGCAGGCGGATTTGTGCA
GGGGGCCAACTGCACCTGCCTGGAACGCTGTCCCTGA

Translation (478 aa):
MGCSWRKTLSFFLVFVPIYLHGASSQEAAPVGPRKPFFERLRRLEEQFRRFQEVTWTHLQNIASNYNVSY
NVDVRFRSLAEESQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQQRARER
KAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQPEELGPTSLKLQRDR
QELRAASEHRGPPQDSSAPLQGRREPPASGSHRVLSGTAPKDPRQQAWSPQVPGEICGVGPTLVFPNAST
RNVVFLSPGFVTALRALSFCSWVRTASGRLGTLLSYATEDNDNKLVLHGRDSLLPGSIHFVIGDPAFREL
PLQLLLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAF
VGSMSGLAIWDRALVPGEVANLAIGKEFPTGAILTLANAALAGGFVQGANCTCLERCP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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