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Report for CCDS86897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86897.1 Public Homo sapiens 2 PJVK 24 110 108 CCDS HistoryNCBI Gene:494513Re-query CCDS DB by CCDS ID:86897.1Re-query CCDS DB by GeneID:494513See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86897.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000642192.1 ENSP00000494225.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642192.1Link to Ensembl Protein Viewer:ENSP00000494225.1Re-query CCDS DB by Nucleotide ID:ENST00000642192Re-query CCDS DB by Protein ID:ENSP00000494225
Original member Current member EBI ENST00000645817.1 ENSP00000495731.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645817.1Link to Ensembl Protein Viewer:ENSP00000495731.1Re-query CCDS DB by Nucleotide ID:ENST00000645817Re-query CCDS DB by Protein ID:ENSP00000495731
Original member Current member EBI ENST00000647226.1 ENSP00000496024.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647226.1Link to Ensembl Protein Viewer:ENSP00000496024.1Re-query CCDS DB by Nucleotide ID:ENST00000647226Re-query CCDS DB by Protein ID:ENSP00000496024
Original member Current member EBI ENST00000642492.1 ENSP00000496267.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642492.1Link to Ensembl Protein Viewer:ENSP00000496267.1Re-query CCDS DB by Nucleotide ID:ENST00000642492Re-query CCDS DB by Protein ID:ENSP00000496267
Original member Current member NCBI NM_001353777.1 NP_001340706.1 Accepted alive Link to Nucleotide Sequence:NM_001353777.1Link to Protein Sequence:NP_001340706.1Re-query CCDS DB by Nucleotide ID:NM_001353777Re-query CCDS DB by Protein ID:NP_001340706Link to BLAST:NP_001340706.1
Original member Current member NCBI NM_001353778.2 NP_001340707.1 Accepted alive Link to Nucleotide Sequence:NM_001353778.2Link to Protein Sequence:NP_001340707.1Re-query CCDS DB by Nucleotide ID:NM_001353778Re-query CCDS DB by Protein ID:NP_001340707Link to BLAST:NP_001340707.1

Chromosomal Locations for CCDS 86897.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 178456080 178456151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178458510 178458627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178460348 178460446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178460982 178461274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGAGAGCATCCGAACCACACGACAGTGCTCACTGTCTGTGCATGCTGGAATTCGAGGGGAAGCAATGC
GGTTTCACTTTATGGATGAACAGAATCCCAAGGGAAGGGACAAAGCTATTGTTTTCCCAGCACATACAAC
CATAGCTTTCAGTGTTTTTGAACTCTTCATATACCTGGATGGTGCCTTTGACCTTTGTGTCACTTCAGTG
TCAAAAGGAGGATTTGAAAGGGAAGAAACGGCAACATTTGCACTGCTGTACAGGTTGAGAAATATCCTAT
TTGAAAGAAATAGAAGAGTGATGGATGTCATTTCTCGTTCACAGCTTTACTTGGATGATCTTTTTTCTGA
CTACTATGACAAACCTCTCAGCATGACTGATATTTCACTCAAAGAAGGGACCCATATCCGAGTTAACTTA
CTTAATCACAACATTCCCAAAGGGCCTTGCATACTCTGTGGAATGGGGAACTTCAAAAGGGAGACAGTTT
ATGGGTGCTTTCAGTGTTCTGTTGATGGTCAGAAGTATGTGAGACTTCATGCAGTTCCTTGTTTTGATAT
TTGGCACAAGAGGATGAAATAA

Translation (193 aa):
MESIRTTRQCSLSVHAGIRGEAMRFHFMDEQNPKGRDKAIVFPAHTTIAFSVFELFIYLDGAFDLCVTSV
SKGGFEREETATFALLYRLRNILFERNRRVMDVISRSQLYLDDLFSDYYDKPLSMTDISLKEGTHIRVNL
LNHNIPKGPCILCGMGNFKRETVYGCFQCSVDGQKYVRLHAVPCFDIWHKRMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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