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Report for CCDS86932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86932.1 Public Homo sapiens 20 SLC4A11 24 110 108 CCDS HistoryNCBI Gene:83959Re-query CCDS DB by CCDS ID:86932.1Re-query CCDS DB by GeneID:83959See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86932.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647296.1 ENSP00000495050.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647296.1Link to Ensembl Protein Viewer:ENSP00000495050.1Re-query CCDS DB by Nucleotide ID:ENST00000647296Re-query CCDS DB by Protein ID:ENSP00000495050
Original member Current member NCBI NM_001363745.2 NP_001350674.1 Accepted alive Link to Nucleotide Sequence:NM_001363745.2Link to Protein Sequence:NP_001350674.1Re-query CCDS DB by Nucleotide ID:NM_001363745Re-query CCDS DB by Protein ID:NP_001350674Link to BLAST:NP_001350674.1

Chromosomal Locations for CCDS 86932.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3227787 3227856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3228259 3228428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3228512 3228707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3228838 3229011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3229095 3229263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3229346 3229452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3229524 3229776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3230187 3230260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3230515 3230647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3230933 3231058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3231149 3231242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3231330 3231548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3233514 3233637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3233921 3234002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3234083 3234314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3234568 3234617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3234742 3234894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3237544 3237588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3239095 3239137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGGCCGCGGCCACCAGGCGCGTGTTCCATCTGCAGCCGTGCGAAAACTCTCCCACCATGTCGCAGAATG
GA
TACTTCGAGGATTCAAGCTACTACAAGTGTGACACAGATGACACCTTCGAAGCCCGAGAGGAGATCCT
G
GGGGATGAGGCCTTCGACACTGCCAACTCCTCCATCGTGTCTGGCGAGAGTATCCGTTTTTTTGTCAAT
GTC
AACCTTGAGATGCAGGCCACCAACACTGAGAATGAAGCGACTTCCGGTGGCTGTGTGCTCCTGCACA
CC
TCCCGAAAGTACCTGAAGTTAAAGAACTTCAAGGAAGAGATCCGTGCGCACCGCGACCTAGATGGCTT
C
CTGGCGCAGGCCAGCATCGTCCTGAACGAGACGGCCACCTCCCTGGATAACGTGCTGCGGACCATGCTT
CGC
CGCTTCGCCAGGGACCCTGACAACAATGAGCCCAACTGCAACCTGGACCTGCTCATGGCCATGCTCT
TC
ACCGATGCCGGGGCACCCATGCGGGGTAAAGTCCACCTGCTGTCAGATACCATCCAAGGGGTCACCGC
C
ACAGTGACAGGGGTGCGGTACCAGCAGTCGTGGCTCTGCATCATCTGTACCATGAAGGCCCTACAGAAG
CGG
CACGTGTGCATCAGCCGCCTGGTTCGCCCACAGAACTGGGGGGAGAATTCCTGTGAGGTTCGGTTCG
TC
ATCCTGGTGCTGGCCCCACCCAAGATGAAAAGCACTAAGACTGCGATGGAGGTGGCGCGCACGTTTGC
C
ACCATGTTCTCGGATATCGCCTTCCGCCAGAAGCTCCTGGAGACCCGCACAGAGGAGGAATTCAAGGAG
GCC
TTGGTGCATCAGAGACAGCTGCTCACCATGGTGAGCCACGGTCCAGTGGCGCCGAGAACGAAGGAAC
GC
AGCACAGTCTCCCTCCCTGCCCACAGACACCCAGAGCCCCCAAAGTGCAAGGACTTTGTCCCTTTTGG
G
AAGGGCATCCGGGAGGACATCGCACGCAGGTTCCCCTTGTACCCCTTGGACTTCACTGATGGCATTATT
GGG
AAAAACAAGGCTGTGGGCAAATACATCACCACCACCCTGTTCCTCTACTTCGCCTGCCTCCTGCCCA
CC
ATCGCTTTCGGGTCTCTCAATGACGAGAACACAGACGGGGCCATCGTGATTCGTGTCATCTGTGATGA
C
TATGACCTGGACTTCAACTCCTTCTACGCATGGACGGGCCTGTGGAATAGTTTCTTCCTTGCGCTTTAT
GCC
TTTTTCAACCTCAGCCTGGTCATGAGTCTCTTCAAGAGGTCGACGGAGGAGATCATCGCCCTCTTCA
TT
TCCATCACGTTTGTGCTGGATGCCGTCAAGGGCACGGTTAAAATCTTCTGGAAGTACTACTATGGGCA
T
TACTTGGACGACTATCACACAAAAAGGACTTCATCCCTTGTCAGCCTGTCAGGCCTCGGCGCCAGCCTC
AAC
GCCAGCCTCCACACTGCCCTCAACGCCAGCTTCCTCGCCAGCCCCACGGAGCTGCCCTCGGCCACAC
AC
TCAGGCCAGGCGACCGCCGTGCTCAGCCTCCTCATCATGCTGGGCACGCTCTGGCTGGGCTACACCCT
C
TACCAATTCAAGAAGAGCCCCTACCTGCACCCCTGCGTGCGAGAGATCCTGTCCGACTGCGCCCTGCCC
ATC
GCGGTGCTCGCCTTCTCCCTCATCAGCTCCCATGGCTTCCGGGAAATCGAGATGAGCAAGTTCCGCT
AC
AACCCCAGCGAGAGCCCCTTTGCGATGGCGCAGATCCAGTCGCTGTCCCTGAGGGCCGTCAGCGGTGC
C
ATGGGCCTCGGCTTCCTGCTGTCCATGCTCTTCTTCATCGAGCAGAACTTGGTGGCCGCCTTGGTGAAT
GCA
CCGGAGAACAGGCTGGTGAAGGGCACTGCCTACCACTGGGACCTCCTGCTCCTCGCCATCATCAACA
CA
GGGCTGTCTCTGTTTGGGCTGCCTTGGATCCATGCCGCCTACCCCCACTCCCCGCTGCACGTGCGAGC
C
CTGGCCTTAGTGGAGGAGCGTGTGGAGAACGGACACATCTATGACACGATTGTGAACGTGAAGGAGACG
CGG
CTGACCTCGCTGGGCGCCAGCGTCCTGGTGGGCCTGTCCCTGTTGCTGCTGCCGGTCCCGCTTCAGT
GG
ATCCCCAAGCCCGTGCTCTATGGCCTCTTCCTCTACATCGCGCTCACCTCCCTCGATGGCAACCAGCT
C
GTCCAGCGCGTGGCCCTGCTGCTCAAGGAGCAGACTGCGTACCCCCCGACACACTACATCCGGAGGGTG
CCC
CAGAGGAAGATCCACTACTTCACGGGCCTGCAGGTGCTTCAGCTGCTGCTGCTGTGTGCCTTCGGCA
TG
AGCTCCCTGCCCTACATGAAGATGATCTTTCCCCTCATCATGATCGCCATGATCCCCATCCGCTATAT
C
CTGCTGCCCCGAATCATTGAAGCCAAGTACTTGGATGTCATGGACGCTGAGCACAGGCCTTGA


Translation (837 aa):
MAAATRRVFHLQPCENSPTMSQNGYFEDSSYYKCDTDDTFEAREEILGDEAFDTANSSIVSGESIRFFVN
V
NLEMQATNT
ENEATSGGCVLLHTSRKYLKLKNFKEEIRAHRDLDGFLAQASIVLNETATSLDNVLRTML
R
RFARDPDNNEPNCNLDLLMAMLFTDAGAPMRGK
VHLLSDTIQGVTATVTGVRYQQSWLCIICTMKALQK
R
HVCISRLVRPQNWGENSCEVRFVILVLAPPKM
KSTKTAMEVARTFATMFSDIAFRQKLLETRTEEEFKE
A
LVHQRQLLTMVSHGPVAPRTKERSTVSLPAHRHPE
PPKCKDFVPFGKGIREDIARRFPLYPLDFTDGII
G
KNKAVGKYITTTLFLYFACLLPTIAFGSLNDENTDGAI
VIRVICDDYDLDFNSFYAWTGLWNSFFLALY
A
FFNLSLVMSLFK
RSTEEIIALFISITFVLDAVKGTVKIFWKYYYGHYLDDYHTKRTSSLVSLSGLGASL
N
ASLHTALNASFLASPTELPSATHSGQATAVLSLLIMLGTLWLGYTLYQFKK
SPYLHPCVREILSDCALP
I
AVLAFSLISSHGFREIE
MSKFRYNPSESPFAMAQIQSLSLRAVSGAMGLGFLLSMLFFIEQNLVAALVN
A
PEN
RLVKGTAYHWDLLLLAIINTGLSLFGLPWIHAAYPHSPLHVRALALVEERVENGHIYDTIVNVKET
R
LTSLGASVLVGLSLLLLPVPLQWIPKPVLYGLFLYIALTSLDGNQLVQRVALLLKEQ
TAYPPTHYIRRV
P
QRKIHYFTGLQVLQLLLLCAFGMSSLPYMKMIFPLIMIAMIPI
RYILLPRIIEAKYLDVMDAEHRP



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser