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Report for CCDS86935.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
86935.1 |
Public |
Homo sapiens |
20 |
SEC23B |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:10483](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:86935.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:10483](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 20 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 86935.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000643747.1 |
ENSP00000496460.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000643747.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000496460.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000643747](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000496460](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001172746.3 |
NP_001166217.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001172746.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001166217.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001172746](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001166217](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001166217.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 86935.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2250 nt): ATGGCGACATACCTGGAGTTCATCCAGCAGAATGAAGAACGGGATGGTGTGCGTTTTAGTTGGAACGTGT GGCCTTCCAGCCGGCTGGAGGCTACAAGAATGGTTGTACCCCTGGCTTGTCTCCTTACTCCTTTGAAAGA ACGTCCAGACCTACCTCCTGTACAATATGAACCTGTGCTTTGCAGCAGGCCAACTTGTAAAGCTGTTCTC AACCCACTTTGTCAGGTTGATTATCGAGCAAAACTTTGGGCCTGTAATTTCTGTTTTCAAAGAAATCAGT TTCCTCCAGCTTATGGAGGCATATCTGAGGTGAATCAACCTGCCGAATTGATGCCCCAGTTTTCTACAAT TGAGTACGTGATACAGGAAGATGACCTTCAAGCACTCAAAGAGTCCCTGCAGATGTCCCTGAGTCTTCTT CCTCCAGATGCTCTGGTGGGTCTGATCACATTTGGAAGGATGGTGCAGGTTCATGAGCTAAGCTGTGAAG GAATCTCCAAAAGTTATGTCTTCCGAGGGACCAAGGATTTAACTGCAAAGCAAATACAGGATATGTTGGG CCTGACCAAGCCAGCCATGCCCATGCAGCAAGCACGACCTGCACAACCACAGGAGCACCCTTTTGCTTCA AGCAGATTTCTGCAGCCTGTTCACAAGATTGATATGAACCTCACTGATCTTCTTGGGGAGCTACAGAGGG ACCCATGGCCAGTAACTCAGGGGAAGAGACCTTTGCGATCCACTGGTGTGGCTTTGTCCATTGCTGTTGG CTTGCTGGAGGGCACTTTTCCAAACACAGGAGCCAGGATCATGCTGTTTACTGGAGGTCCCCCTACCCAA GGGCCTGGCATGGTGGTTGGAGATGAATTAAAGATTCCTATTCGTTCTTGGCATGATATTGAGAAAGATA ATGCACGATTCATGAAAAAGGCAACCAAGCACTATGAGATGCTTGCTAATCGAACAGCTGCAAATGGTCA CTGCATTGATATTTATGCTTGTGCCCTTGATCAAACTGGACTTTTGGAGATGAAGTGTTGTGCAAATCTT ACTGGAGGCTACATGGTAATGGGAGATTCTTTCAACACTTCTCTCTTCAAGCAGACATTCCAAAGAATCT TTACTAAAGATTTTAATGGAGATTTCCGAATGGCATTTGGTGCTACTTTGGACGTAAAGACCTCTCGGGA ACTGAAGATTGCAGGAGCCATTGGTCCATGCGTATCTCTGAATGTGAAAGGACCGTGTGTGTCAGAAAAT GAGCTTGGTGTTGGTGGCACGAGTCAGTGGAAAATCTGTGGCCTAGATCCTACATCTACACTTGGCATCT ATTTTGAAGTTGTCAATCAGCACAACACCCCGATCCCCCAAGGAGGCAGAGGAGCCATCCAGTTTGTCAC GCATTATCAGCACTCCAGCACCCAGAGACGCATCCGCGTGACCACCATCGCCCGAAATTGGGCAGATGTA CAGAGTCAGCTCAGGCACATAGAAGCAGCATTTGACCAGGAGGCTGCGGCAGTGTTGATGGCACGGCTTG GGGTGTTCCGAGCGGAGTCAGAGGAGGGGCCCGATGTGCTCCGGTGGCTGGACCGACAACTCATCCGACT GTGTCAAAAGTTTGGACAGTATAACAAAGAAGACCCCACTTCTTTTAGGTTATCAGATTCCTTTTCTCTA TATCCTCAGTTTATGTTCCATCTGAGAAGATCTCCATTTCTTCAAGTGTTTAACAACAGTCCTGATGAGT CGTCATATTACAGACATCATTTTGCCCGGCAGGACCTGACCCAGTCCCTCATCATGATCCAGCCCATTCT CTACTCTTACTCCTTTCATGGGCCACCAGAGCCAGTACTCTTGGATAGCAGCAGCATTCTAGCTGACAGA ATTTTGCTGATGGATACTTTCTTTCAAATTGTCATTTATCTTGGTGAGACCATAGCCCAGTGGCGTAAAG CTGGCTACCAGGACATGCCCGAGTATGAAAACTTCAAGCACCTTCTGCAGGCACCACTGGATGATGCTCA AGAAATTCTGCAAGCACGCTTCCCGATGCCACGTTACATCAACACGGAGCATGGAGGCAGTCAGGCTCGA TTCCTTTTGTCCAAAGTGAACCCATCTCAGACACACAATAACCTGTATGCTTGGGGACAGGAAACTGGAG CACCCATCCTAACTGATGATGTTAGCCTGCAGGTGTTCATGGACCATTTGAAGAAGCTGGCTGTCTCCAG TGCCTGTTAA
Translation (749 aa): MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAVL NPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYVIQEDDLQALKESLQMSLSLL PPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQQARPAQPQEHPFAS SRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQ GPGMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLLEMKCCANL TGGYMVMGDSFNTSLFKQTFQRIFTKDFNGDFRMAFGATLDVKTSRELKIAGAIGPCVSLNVKGPCVSEN ELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNTPIPQGGRGAIQFVTHYQHSSTQRRIRVTTIARNWADV QSQLRHIEAAFDQEAAAVLMARLGVFRAESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSL YPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADR ILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQAR FLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC
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